Building from source #42

uwgeophys · 2022-07-25T22:11:17Z

Hello,

I wonder if you can help, it appears that the geomajas link in the POM file is down.
Do you know of an alternative @douggillespie ?

I am trying to build a version that has the command/udp function to work with; and it appears the latest release version doesn't, it was fixed a few months after according to the commits.

That or can we get release of a new version posted?

Thank you,

douggillespie · 2022-07-26T07:16:42Z

Hi,
I was also having trouble with Maven yesterday, but didn't have time to investigate to see which package was causing problems. It seems OK now. However, I checked the usage of geomajas and it doesn't seem to be used anywhere, so I suggest you:
a) try another Maven update and see if the problem is resolved
b) remove that repo from the pom.xml file. I'll do the same on the main branch sometime soon.
Douglas.

commit db037c6d2936148e0b4fcbba79e1d9f79a3ad51f Author: Douglas Gillespie <[email protected]> Date: Fri May 12 15:37:21 2023 +0100 Fixing SUD order commit c95579d04f58ee637f5e22e1e6e60c69d7354696 Merge: bf5f0dac 88b03420 Author: Douglas Gillespie <[email protected]> Date: Fri May 12 10:03:58 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit bf5f0daca547f33acc228596168bb87ac25639fe Author: Douglas Gillespie <[email protected]> Date: Fri May 12 10:03:30 2023 +0100 NI Playback bug Fix bug in NI playback which threw an exception if no devices were present and configured in NI-MAX commit 88b034207a64c052c891a2507c045492206695ec Author: Douglas Gillespie <[email protected]> Date: Mon May 8 15:44:26 2023 +0100 Merge pull request #42 from PAMGuard/main (#106) commit 29f0bf7e48978ae37fe06889183b9c9840480409 Merge: f5ff9da8 2953d82b Author: Douglas Gillespie <[email protected]> Date: Mon May 8 15:43:46 2023 +0100 Merge branch 'main' into main commit f5ff9da8dda01f5e6c7bcfd8d20c1ca1e24c70d9 Author: Douglas Gillespie <[email protected]> Date: Mon May 8 15:23:31 2023 +0100 updated x3 repo Updated X3 to use CRC checks on data. Affects a small number of sud files. commit af82147f9ea4570e1f9089ab35875441f15928b4 Author: Douglas Gillespie <[email protected]> Date: Fri May 5 14:14:22 2023 +0100 Bug fix Bug fix in binary store checks commit a7cacc108f9672056b611f17f460053bc7dbddee Author: Douglas Gillespie <[email protected]> Date: Thu May 4 13:39:50 2023 +0100 update to X3 repo commit 36cd0af0bc2a5a4b9638080a3cc7dc787f83213c Author: Douglas Gillespie <[email protected]> Date: Wed May 3 19:17:36 2023 +0100 updated x3 library commit 56cb06ea1c65978ec78486098df8d24eb09dd05f Author: Douglas Gillespie <[email protected]> Date: Wed May 3 19:10:07 2023 +0100 Batch and X3 updates (#105) * Update FileListWorker.java * Support batch processing Multicast controller and a couple of additional commands to work with the batch processing plugin. * Database float unpack Better unpacking checks of floats coming back from the database * Batch changes Changes in support of batch processing * Small changes for batch processing * update X3 to get Detector parameters X3 and PAMguard updated to get and save the SoundTrap click detector parameters. commit 2953d82b58448f1e41c8f18a7eb878bf9945a175 Author: Douglas Gillespie <[email protected]> Date: Wed May 3 19:06:45 2023 +0100 update X3 to get Detector parameters X3 and PAMguard updated to get and save the SoundTrap click detector parameters. commit f74bb5eb897e29d16f352aca22a039c2f65d66d1 Merge: 795b32e4 317f8726 Author: Douglas Gillespie <[email protected]> Date: Mon Apr 24 13:29:09 2023 +0100 Merge pull request #41 from PAMGuard/main updated x3 commit 317f87265a91829762960dbbb1da4cb71d162c25 Author: Douglas Gillespie <[email protected]> Date: Mon Apr 24 12:49:19 2023 +0100 Updated x3 updated SUD reader to handle and unexpectedchunkID. commit 96d18b85a7569cdac072a053957b266a2d3f6601 Merge: 73282b9a 6a0c9b55 Author: Douglas Gillespie <[email protected]> Date: Wed Apr 19 09:08:58 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard commit 73282b9a718fb3defb0eca53474d3ee4af213f50 Author: Douglas Gillespie <[email protected]> Date: Wed Apr 19 09:07:54 2023 +0100 checking nan sample rate in ST Click detector commit 6a0c9b55d196a164fe51327ecb18499b8cc3f004 Author: Douglas Gillespie <[email protected]> Date: Wed Apr 19 09:05:25 2023 +0100 Improvements for batch processing (#104) * Update FileListWorker.java * Support batch processing Multicast controller and a couple of additional commands to work with the batch processing plugin. * Database float unpack Better unpacking checks of floats coming back from the database * Batch changes Changes in support of batch processing * Small changes for batch processing commit 795b32e44002b7ef7792215a8a6dc40a21b594ec Merge: e3a7dc3a 57bae3c3 Author: Douglas Gillespie <[email protected]> Date: Thu Apr 13 17:11:28 2023 +0100 Merge pull request #40 from PAMGuard/main merge fix in reprocess manager commit e3a7dc3ad1c6e866806033578b407855869c54ff Author: Douglas Gillespie <[email protected]> Date: Thu Apr 13 17:06:53 2023 +0100 Small changes for batch processing commit 57bae3c39c1f92c4748bf367a6d9fc498542277a Author: Douglas Gillespie <[email protected]> Date: Thu Apr 13 17:05:40 2023 +0100 Fix reprocess manager Stop it responding with stupid questions when there are no part complete stores. commit 87db5ae6ab7d39c26335cce0b8d8f42340b0af42 Author: Douglas Gillespie <[email protected]> Date: Fri Apr 7 18:36:51 2023 +0100 Merge batch support (#103) * Update FileListWorker.java * Support batch processing Multicast controller and a couple of additional commands to work with the batch processing plugin. * Database float unpack Better unpacking checks of floats coming back from the database * Batch changes Changes in support of batch processing commit f97977a1eaedfb7b5eae6b59325b5bc4b0374b7c Merge: fff36a90 7ae7739b Author: Douglas Gillespie <[email protected]> Date: Fri Apr 7 18:36:07 2023 +0100 Merge pull request #39 from PAMGuard/main Batch Processing (#102) commit fff36a904b346654bbaf1ddb7dec71be8f2a993c Author: Douglas Gillespie <[email protected]> Date: Fri Apr 7 18:32:18 2023 +0100 Batch changes Changes in support of batch processing commit 7ae7739b22ccdf6a9cd0c77de80397e781b083b7 Author: Douglas Gillespie <[email protected]> Date: Fri Apr 7 18:25:27 2023 +0100 Batch Processing (#102) * Update FileListWorker.java * Support batch processing Multicast controller and a couple of additional commands to work with the batch processing plugin. * Database float unpack Better unpacking checks of floats coming back from the database commit 30fbc6d290c667d4bdef1a2ddc83cd36c7880218 Author: Douglas Gillespie <[email protected]> Date: Thu Apr 6 21:43:20 2023 +0100 Database float unpack Better unpacking checks of floats coming back from the database commit a2da810690e548c2e416f9a3f4b308588f698b99 Author: Douglas Gillespie <[email protected]> Date: Thu Apr 6 16:44:47 2023 +0100 Support batch processing Multicast controller and a couple of additional commands to work with the batch processing plugin. commit 2bb8c0b16439f68acf2a5c0d59ce57738e0c4040 Merge: da21d54d ed776704 Author: Douglas Gillespie <[email protected]> Date: Wed Apr 5 19:36:10 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard commit da21d54d3ed51e117f06c6b5f539a8bbb7d19e0d Author: Douglas Gillespie <[email protected]> Date: Wed Apr 5 19:35:48 2023 +0100 Update FileListWorker.java commit ed77670458ff8828493085cc468a85c106ee8c22 Merge: 16e8184a 42d560f9 Author: Douglas Gillespie <[email protected]> Date: Wed Apr 5 19:33:16 2023 +0100 Merge pull request #38 from PAMGuard/main Merge in from main commit 42d560f91b8a813263dab2d5d184f5a54ae56dbb Merge: 629f4309 16e8184a Author: Douglas Gillespie <[email protected]> Date: Wed Apr 5 19:33:05 2023 +0100 Merge branch 'main' into main commit 629f430988b9b18d99af4237696ae7ad1e456997 Author: stabbutt <[email protected]> Date: Wed Apr 5 01:37:17 2023 -0700 Merge SMRUC Fork to PG Main Fork (#101) * Fix network sender since it was hopelessly out of date and did not send data in the correct format. OK now, though only tested on NARW. * Fix network sender since it was hopelessly out of date and did not send data in the correct format. OK now, though only tested on NARW. * Mods to support command line and Network control of PAMGuard and to retrieve summary information from some modules. * Fix issue #80: recording path command line override * Allow RUNNOTHING bearing calculations * Quick solution to issue #88. * Added logic to allow run nothing direct PAMGuard control for SMRU Consulting batch processing * Mistake in merge, committing changes from PAMGuard Main to SMRU Fork * Run nothing updates for preventing thread leaks on bash * Synchronize with Pamguard Main at PAMGuard/Pamguard:main commit 3573eaa on 1/24/23 * Added network sender global arguments for port, ipaddress, station Id1, station Id2 * Added runtime arguments for network send configuration * Fix typo in tag 'netSend' rather than 'newSend' * Fixed typo. set port to port, not to address --------- Co-authored-by: Douglas Gillespie <[email protected]> commit 74066712b8d5f9f83926dbe3fdf43bad4b27bed8 Author: Douglas Gillespie <[email protected]> Date: Tue Apr 4 18:04:13 2023 +0100 Fix Data export bug Bug causing npe when exporting data to database. Fixed problem. And better error messages in some thrown exceptions to make it easier to identify where errors are occurring. commit 16e8184a2311bc14211a042b4b346957a728a434 Author: Douglas Gillespie <[email protected]> Date: Wed Mar 1 16:43:08 2023 +0000 Batch processing Updates to support batch processing control commit 5f9d29e1313d9d69ae39af6d246e413fc7b58db6 Author: Douglas Gillespie <[email protected]> Date: Tue Feb 21 16:01:50 2023 +0000 Reprocessing Ironed out a few bugs in restarting processing. commit f910d805179e1b7b0810d88fbb74780f78d100f8 Author: Douglas Gillespie <[email protected]> Date: Mon Feb 20 17:15:54 2023 +0000 Reprocessing options Analysis of input and output files and can restart from where it left off when processing an offline dataset. commit f64deecbd57acbf043e9955d2f5a55c26061092c Author: Douglas Gillespie <[email protected]> Date: Fri Feb 17 11:12:08 2023 +0000 Fix but in filedata Stops errors (and returns 0) if an invalid user data format is used. commit e4c4c95340375985b8089f0ccb753cebebeea4b8 Author: Douglas Gillespie <[email protected]> Date: Tue Feb 7 17:35:01 2023 +0000 Synchronizing object packing Synchronize object packing between the binary store and the network sender since we're having trouble with these two users of data overwriting each others work in progress. commit ac004ab9cc2195cf6d1d0d9dc088628bcaf598bd Author: Jamie Mac <[email protected]> Date: Thu Feb 2 14:05:24 2023 +0000 Deep learning bug fixes. (#95) * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * More screenshots * Add screenshots * Update click_train_help.md * Add classifier screenshot * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update POM with latest jdl4pam * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Update pom.xml * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Update click_train_help.md * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Merge fixes to click train detector * Bug fix to UI * Updates to FX GUI * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Updates and bug fixes to click train detector and CPOD importer * Fix standard classifier JSON logging * Merge fixes to click train detector * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Fix standard classifier JSON logging * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Bug fix to UI * Bug fixes to FX GUI * Updates to click train detector * Squashed commit of the following: commit 9f998165ee95dbb16acaf420876f3aeab75c2158 Author: Douglas Gillespie <[email protected]> Date: Mon May 2 19:40:24 2022 +0100 Updates to support ContactCollator plugin (#33) * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * fix problem in SummaryComand * Update command line options * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * Update command line options * Update DecimatorParams.java * couple of updates to support new contact collator plugin * Sorting out sample rate info in clip display to support Contact Collator plugin * FLAC Speed Improve flac speed * Update .gitignore * Update .gitignore * Updates to support new features in Contact Collator * Small update to RawDatautils to handle null data * Updates to click train detector * Squashed commit of the following: commit 62b020b3204aa56189b1c2da88bcbb9f49140936 Author: Douglas Gillespie <[email protected]> Date: Sat May 14 06:52:20 2022 +0100 Add a new offlinefileslist function commit 3a9a5311aa529b66340f6ae322f88905b911947a Author: Douglas Gillespie <[email protected]> Date: Wed Apr 27 09:43:31 2022 +0100 Update .gitignore commit 9f998165ee95dbb16acaf420876f3aeab75c2158 Author: Douglas Gillespie <[email protected]> Date: Mon May 2 19:40:24 2022 +0100 Updates to support ContactCollator plugin (#33) * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * fix problem in SummaryComand * Update command line options * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * Update command line options * Update DecimatorParams.java * couple of updates to support new contact collator plugin * Sorting out sample rate info in clip display to support Contact Collator plugin * FLAC Speed Improve flac speed * Update .gitignore * Update .gitignore * Updates to support new features in Contact Collator * Small update to RawDatautils to handle null data * Updated data selector for click train detector * Click train detector updates and bug fixes Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing. Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify. * Bug fix and improvements for Ketos Ketos models now automatically set the correct sample length when loaded. Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions. * Updates to deep learning and FX GUI Added some more example sounds to deep learning UI. Updated click detector in the FX GUI. * PAMGuard FX sound output update * Updates to FX GUI * Updates to FX GUI * Update RawDataTransforms.java * Fixes to FX UI * Squashed commit of the following: commit 11ba8bf91e1cd55e4305c4060a379f9ff0c58c4d Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:45:47 2022 +0100 MErge from DG Branch (#47) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 9a9f542d95b6cbc571d60a2250a2d4accf8dc4b3 Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:42:45 2022 +0100 Merge DG to Main (#46) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 49cd547aee3e4366e1aaa51b8fe7418199c2ad73 Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:40:29 2022 +0100 Merge DG branch (#45) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 016cfd0da54021dcbe787f0a20856604b81bf7af Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:35:06 2022 +0100 Dialog positioning New functions to better positions dialogs on screen commit c9f2ab3e97ec289ee8c1bcfe4531c84f77ee7fa8 Author: Douglas Gillespie <[email protected]> Date: Mon Aug 1 11:13:24 2022 +0100 puch to main (#44) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors commit 55f5a3fcf12c6c8a727318a17f9dece401adc9f3 Author: Douglas Gillespie <[email protected]> Date: Mon Aug 1 10:59:36 2022 +0100 Group detections menu Small changes to limit the number of menu items in "Add to existing group" to a maximum of 25 entries. commit b3f6c0e6657de91a7e015a48f5f218f60f23c5f5 Author: Douglas Gillespie <[email protected]> Date: Fri Jul 29 10:50:45 2022 +0100 Handle -nogui option in PamWorker PamWorker used to catalog files at startup (if a file folder input system is used). This creates a progress dialog. Stop it appearing in -nogui operations. commit 8569b6b579659cba8229596e91c35355bc5ed61b Author: Douglas Gillespie <[email protected]> Date: Fri Jul 22 08:30:47 2022 +0100 Click display fixes (#41) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors commit 128a512ff60c26b5acedd76de96c0905c6bf27ae Author: Douglas Gillespie <[email protected]> Date: Tue Jul 19 16:37:57 2022 +0100 Another attempt at stopping it crashing on a headless system Dealing with displays that get created for clickangle vetos and a call to the gui in the click train detector. commit 6eaa6e4978b2483e5828ca4a3914c58d7a9cfe2d Author: Douglas Gillespie <[email protected]> Date: Tue Jul 19 08:20:07 2022 +0100 nogoi fix for headless systems. (#40) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. commit 9fdd30556bf391428e1d3f2f9e91dbbdf771fa84 Author: Douglas Gillespie <[email protected]> Date: Tue Jul 12 15:53:07 2022 +0100 Variable sound output level (#39) Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Bug fixes to click train detector Fixed bug with number of coasts in the MHT Kernel Added an option for amplitude to have a maximum Removed print statements. * Bug fix for click train logging The size of the string classifers field was dynamically set - this was a bug. * Bug fixes to the click train detector Bearing classifier section now updates properly when dialog reopened Fixed rare bug when garbage bot attempts to find the last data unit in a list of zero units. * Squashed commit of the following: commit 5a37bfe915925ea2307dd09928538c7e639ca52c Author: Douglas Gillespie <[email protected]> Date: Fri Aug 19 08:17:06 2022 +0100 Changes from DG branch (#50) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality * Java version Changes unpacker to deal with non numeric characters on Linux * Fix to getVersion() So new version of this command should now work on Linux and Windows. * Multiport test Quick tester for multiport comms * Spectrogram display Stop spectrogram display continually recreating panels since it was unsubscribing discarded ones and sometimes causing crash in observable notifications. * Backup manager bug Error if no database. Fixed. commit b08e86e330c5ca2de4b6902eb7ec514f47278a7c Author: Jamie Mac <[email protected]> Date: Wed Aug 17 09:16:52 2022 +0100 Bug fix for click train detector (#49) * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * More screenshots * Add screenshots * Update click_train_help.md * Add classifier screenshot * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update POM with latest jdl4pam * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Update pom.xml * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Update click_train_help.md * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Merge fixes to click train detector * Bug fix to UI * Updates to FX GUI * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Updates and bug fixes to click train detector and CPOD importer * Fix standard classifier JSON logging * Merge fixes to click train detector * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Screenshots * Updates and bug fixes to click train detector and CPOD importer * Fix standard classifier JSON logging * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Bug fix to UI * Bug fixes to FX GUI * Updates to click train detector * Squashed commit of the following: commit 9f998165ee95dbb16acaf420876f3aeab75c2158 Author: Douglas Gillespie <[email protected]> Date: Mon May 2 19:40:24 2022 +0100 Updates to support ContactCollator plugin (#33) * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * fix problem in SummaryComand * Update command line options * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * Update command line options * Update DecimatorParams.java * couple of updates to support new contact collator plugin * Sorting out sample rate info in clip display to support Contact Collator plugin * FLAC Speed Improve flac speed * Update .gitignore * Update .gitignore * Updates to support new features in Contact Collator * Small update to RawDatautils to handle null data * Updates to click train detector * Squashed commit of the following: commit 62b020b3204aa56189b1c2da88bcbb9f49140936 Author: Douglas Gillespie <[email protected]> Date: Sat May 14 06:52:20 2022 +0100 Add a new offlinefileslist function commit 3a9a5311aa529b66340f6ae322f88905b911947a Author: Douglas Gillespie <[email protected]> Date: Wed Apr 27 09:43:31 2022 +0100 Update .gitignore commit 9f998165ee95dbb16acaf420876f3aeab75c2158 Author: Douglas Gillespie <[email protected]> Date: Mon May 2 19:40:24 2022 +0100 Updates to support ContactCollator plugin (#33) * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * fix problem in SummaryComand * Update command line options * Change synchronization on RawDataTransforms soit uses the owner data holder, not itself for synchronization. Otherwise you get thread locks. * Update command line options * Update DecimatorParams.java * couple of updates to support new contact collator plugin * Sorting out sample rate info in clip display to support Contact Collator plugin * FLAC Speed Improve flac speed * Update .gitignore * Update .gitignore * Updates to support new features in Contact Collator * Small update to RawDatautils to handle null data * Updated data selector for click train detector * Click train detector updates and bug fixes Fixed very annoying bug which meant templates did not show properly when the dialog was first opened in swing. Added feature to simple classifier were % of clicks of one click classification (or other data selector paramter) can be used to classify. * Bug fix and improvements for Ketos Ketos models now automatically set the correct sample length when loaded. Bug fix for the TDisplayFX - null pointer exception if no class names loaded and sorted recently introduced bug in drawing predictions. * Updates to deep learning and FX GUI Added some more example sounds to deep learning UI. Updated click detector in the FX GUI. * PAMGuard FX sound output update * Updates to FX GUI * Updates to FX GUI * Update RawDataTransforms.java * Fixes to FX UI * Squashed commit of the following: commit 11ba8bf91e1cd55e4305c4060a379f9ff0c58c4d Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:45:47 2022 +0100 MErge from DG Branch (#47) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 9a9f542d95b6cbc571d60a2250a2d4accf8dc4b3 Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:42:45 2022 +0100 Merge DG to Main (#46) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 49cd547aee3e4366e1aaa51b8fe7418199c2ad73 Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:40:29 2022 +0100 Merge DG branch (#45) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors * UDP Control Added multiport functionality commit 016cfd0da54021dcbe787f0a20856604b81bf7af Author: Douglas Gillespie <[email protected]> Date: Thu Aug 4 11:35:06 2022 +0100 Dialog positioning New functions to better positions dialogs on screen commit c9f2ab3e97ec289ee8c1bcfe4531c84f77ee7fa8 Author: Douglas Gillespie <[email protected]> Date: Mon Aug 1 11:13:24 2022 +0100 puch to main (#44) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors * Work on batch processing, after testing of options to autostart, autoexit and set wav file folder, database and binary store. * Update MHTClickTrainAlgorithm.java Fix unsynchronised access to a datablock in click train detector which was causing index errors. * Revamp of offline process messaging and control Includes some databsae logging of completed tasks * Offline task logging Bit more work, including notes and database storage of task reprocessing. Guess this could all become 'proper' PAMGuard data and be shown in a table on the display but that not priority enough. * Dialog packing Fix a couple of dialogs which don't back well on HDPI monitors commit 55f5a3fcf12c6c8a727318a17f9dece401adc9f3 Author: Douglas Gillespie <[email protected]> Date: Mon Aug 1 10:59:36 2022 +0100 Group detections menu Small changes to limit the number of menu items in "Add to existing group" to a maximum of 25 entries. commit b3f6c0e6657de91a7e015a48f5f218f60f23c5f5 Author: Douglas Gillespie <[email protected]> Date: Fri Jul 29 10:50:45 2022 +0100 Handle -nogui option in PamWorker PamWorker used to catalog files at startup (if a file folder input system is used). This creates a progress dialog. Stop it appearing in -nogui operations. commit 8569b6b579659cba8229596e91c35355bc5ed61b Author: Douglas Gillespie <[email protected]> Date: Fri Jul 22 08:30:47 2022 +0100 Click display fixes (#41) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. * Click detector display fixes 1. ICI not displaying correctly 2. Component sizes in display dialog on hres monitors commit 128a512ff60c26b5acedd76de96c0905c6bf27ae Author: Douglas Gillespie <[email protected]> Date: Tue Jul 19 16:37:57 2022 +0100 Another attempt at stopping it crashing on a headless system Dealing with displays that get created for clickangle vetos and a call to the gui in the click train detector. commit 6eaa6e4978b2483e5828ca4a3914c58d7a9cfe2d Author: Douglas Gillespie <[email protected]> Date: Tue Jul 19 08:20:07 2022 +0100 nogoi fix for headless systems. (#40) * Variable sound output level Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Code to support nogui operations when no screens present on headless system * Fix problem of nogui headless operation trying to access screen size. commit 9fdd30556bf391428e1d3f2f9e91dbbdf771fa84 Author: Douglas Gillespie <[email protected]> Date: Tue Jul 12 15:53:07 2022 +0100 Variable sound output level (#39) Mods to SoundPlayback module to allow additional parameters. Implemented system for NI cards to allow changes to selected output voltage range meaning output can be boosted to level higher than current default. * Bug fixes to click train detector Fixed bug with number of coasts in the MHT Kernel Added an option for amplitude to have a maximum Removed print statements. * Bug fix for click train logging The size of the string classifers field was dynamically set - this was a bug. Co-authored-by: Douglas Gillespie <[email protected]> commit ef0330173b5a9683fb79c9cb027b207a768ae30c Author: Jamie Mac <[email protected]> Date: Mon Aug 8 10:32:19 2022 +0100 Click trian detector fixes (#48) * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * More screenshots * Add screenshots * Update click_train_help.md * Add classifier screenshot * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update POM with latest jdl4pam * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Update pom.xml * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a minor * Bug fix for raw spectrogram in TDDisplayFX * Update KetosClassifier.java * Fix standard classifier JSON logging * Update click_train_help.md * Fixed bug in sweep classifier when using SoundTrap click detections * Added some colour averaging in the TFDisplayFX spectrgoram * Bug fix for rainbow click bearings Bug fix when rainbow clicks are imported mean bearings cannot be calculated - was an array size issue in DelayGroup * Google humpback whale deep learning classifier Google's humpback whale deep learning classifier can now be imported. Updated TDisplayFX to make the data selection panes cleaner and clearer. Updated the TDisplayFX so that predicitons from deep learning models now have some display options e.g. changing colour. * Updated the prediction plots on time display Deep learning prediciton plots on the time display have now been updated to have some colour options and also act as a legend. * Updates to TDisplayFX yFIshmael now owrks with TDisplayFX TDisplayFX UI changes to make simpler. Some abstraction for drawing lines on TDisplayFX * Updates to click train detector New GUI for click train classification - more intuitive and allows users to build more powerful classifiers. CPOD data can now build average waveforms. CPOD click trains can be viewed in TDisplayFX pop up menu displays Fixed Peak Frequency symbol chooser so it saves the colour box settings * Create click_train_help.md * Update click_train_help.md * Screenshots * Update click_train_help.md * More screenshots * Update click_train_help.md * Update click_train_help.md * Add screenshots * Add classifier screenshot * Update click_train_help.md * Updates and bug fixes to click train detector and CPOD importer * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Update click_train_help.md * Add screenshots for click train detector help * Screenshots * Update click_train_help.md * Defult option for CPOD and porpoise to click train detector. Also a…

X3 updates

commit c64fa8fe9d90b29d4afabc5f967453d9635e8126 Author: Douglas Gillespie <[email protected]> Date: Thu Mar 7 11:24:20 2024 +0000 opt to easily turn off restart debug output commit 48c5387291a02018d48d7f214653d1a799cee173 Author: Douglas Gillespie <[email protected]> Date: Thu Mar 7 09:22:45 2024 +0000 binary store count (#129) Fix issue in binary store object count commit 769193703a6b0024cfc15eb830884706b5ae14f6 Merge: 308442f2 23062c3f Author: Douglas Gillespie <[email protected]> Date: Thu Mar 7 09:16:45 2024 +0000 Merge branch 'restart' into main commit 308442f201bf7843fe9e22c8bf63545179fb723f Author: Douglas Gillespie <[email protected]> Date: Thu Mar 7 09:14:33 2024 +0000 Merge from dg dev main (#128) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <[email protected]> commit 23062c3ff4924f55d79c30e919d2e05242df6f17 Author: Douglas Gillespie <[email protected]> Date: Mon Mar 4 13:59:09 2024 +0000 Update PamController.java add in debug output at start and stop commit 85b47c86af95875d07809e72e4fe1ba63e13645a Author: Douglas Gillespie <[email protected]> Date: Mon Mar 4 13:05:56 2024 +0000 exception handling A bit more exception handling in click train detector and output of a version 10aa/other commit e3ffd56f697d6998732a8f186c9aefa12b953336 Merge: 1200b13f e6c2f325 Author: Douglas Gillespie <[email protected]> Date: Mon Mar 4 12:28:42 2024 +0000 Merge branch 'restart' of https://github.com/douggillespie/PAMGuard into restart commit e6c2f325b2b67bab59e95715eb23531b43b2b492 Author: Douglas Gillespie <[email protected]> Date: Sat Mar 2 10:43:41 2024 +0000 Binary store Fix err in binary footer where count of objects also included the count of noise measurements. commit 45b99273fa4392bd75a6f323aab25fc61910e0f5 Author: Douglas Gillespie <[email protected]> Date: Tue Feb 27 19:09:58 2024 +0000 Restore single param call into PamParameterSet.autoGenerate commit c36ad2a33a5eef6215c6f5e7bf7865c36877d0b5 Author: Douglas Gillespie <[email protected]> Date: Tue Feb 27 15:55:02 2024 +0000 Fix settings load. Problems in viewer mode with long (>50char) settings names which don't get fully stored in the database. Fixed by only looking at the start of the name. Better to not use such long names. commit 2721095a033f37f27a17fdb6b0299779889d32af Author: Douglas Gillespie <[email protected]> Date: Tue Feb 27 14:08:22 2024 +0000 Fix compound data selector V2.02.10b also a bug in logger forms if malformed UDF's commit 1200b13f956ca24436bbf148702d743964c69a4d Author: Douglas Gillespie <[email protected]> Date: Fri Feb 23 15:53:00 2024 +0000 Exception handling in CTD commit 156952bafe13295ed8e29ca492f5a9984ba20f0a Author: Douglas Gillespie <[email protected]> Date: Thu Feb 22 17:40:45 2024 +0000 Update MHTClickTrainAlgorithm.java Synchronize calls into MHT Algorithm across threads (can mess up during restarts otherwise) commit e491028ef73f60011ca8fc7fddf10508d181a71a Merge: d2263bbb 21b4bc13 Author: Douglas Gillespie <[email protected]> Date: Thu Feb 15 16:52:29 2024 +0000 Merge pull request #66 from PAMGuard/main merge from main commit d2263bbba5efb7f31618a4d167544d99982ab7ef Author: Douglas Gillespie <[email protected]> Date: Thu Feb 15 16:48:33 2024 +0000 Functions for better restarting after buffer overflow. commit 21b4bc130dbb350da0a58d9d87612f21d87cf7e2 Author: Douglas Gillespie <[email protected]> Date: Fri Feb 9 11:53:35 2024 +0000 Hydrophone data loading Change how hydrophone data are loaded in viewer. Don't load ALL data. Load the loading period + some before the load period which will be one minute of data PLUS an extra n*2 data before that extra minute where n is the number of hydrophones. commit e52701353a8ad266d078bfb4326143b6c34071e8 Author: Douglas Gillespie <[email protected]> Date: Mon Feb 5 13:34:15 2024 +0000 Fix data integrity bug Fix of bug that 'fixed' event start and end times in database for linked parent / child event tables. Error was caused by a mix up between ParentID and ParentUID fields. commit 66b73c45e2084cf7b37100d4cb5a089f9cde66a3 Merge: 0dc47fcb 9fe8e353 Author: Douglas Gillespie <[email protected]> Date: Fri Feb 2 09:08:19 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit 0dc47fcb0b144559f363bcbeddb0101f9057f3e5 Author: Douglas Gillespie <[email protected]> Date: Fri Feb 2 09:07:55 2024 +0000 click display arrangement Added options to NOT automatically rearrange all the windows in the click display every time the display size changes commit 9609546602e58d0b6bddab27e5983968a2ceca4d Merge: 82e02a21 67e58416 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 15:01:04 2024 +0000 Merge pull request #65 from douggillespie/Tethys Tethys commit 67e5841668d54d9dd352c5ddcc8e9b025ee2fced Merge: 6b184529 9fe8e353 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 15:00:00 2024 +0000 Merge pull request #64 from PAMGuard/main Merge from main commit 9fe8e353220986bdee00d3563969872c7a44e5da Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 14:58:50 2024 +0000 MErge from dg (#127) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <[email protected]> commit 1c532906ca126d914ba087682453769919879297 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 14:57:38 2024 +0000 Merge from dg (#126) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <[email protected]> commit 82e02a21b3bbbe5ef123932d257c8c68d40b8b05 Merge: 8b57a398 c4192a73 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 14:56:43 2024 +0000 Merge pull request #63 from PAMGuard/main MErge from main commit c4192a7323e93ec61adef46975d6ae0dd2c431ba Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 14:51:29 2024 +0000 Version 2.02.10 final commit of updated version info for release commit 5466914d4ebe65c67f1a66ac82c17e5956da470b Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 11:55:34 2024 +0000 Merge from dev branch (#125) * updating Tethys help * added help details server connection & calibration * Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. * Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. * More help documentation Continued writing general export help. Added new css style Added image * Fix type in Deployment export * Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. * System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. * Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images * Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. * Add species codes TOC in help * Documented new species search in help * Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. * fixed anchor html problem * Messing around with checking of required fields in nilus objects. * split Tethys help files into smaller chunks * Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. --------- Co-authored-by: Marie <[email protected]> commit 8b57a3982a643a6d680a41be34a2aa02a447ea93 Merge: f4993425 cb0d191c Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 11:54:17 2024 +0000 Merge pull request #62 from PAMGuard/main Update README.html commit f4993425b50a3d08debda955fcb7c2fd7c13db2c Merge: dacfab07 6b184529 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 30 11:52:32 2024 +0000 Merge pull request #61 from douggillespie/Tethys TethysMerge in from Tetthys commit cb0d191c08ab5c659b03886a13e8752f8a47e7b7 Author: Douglas Gillespie <[email protected]> Date: Mon Jan 29 20:50:07 2024 +0000 Update README.html Fix problems of weird characters in readme.html commit 6b1845293c0ed7123cc8ca9b0b4c536e9c80e78b Author: Douglas Gillespie <[email protected]> Date: Mon Jan 29 16:54:24 2024 +0000 Update button enablers And reinstate output of a single deployment document, with non-recording periods stores in the QA section And update help TOC for latest help documents. commit 810ec67077806fb65757807aa1f944a1a3db196e Author: Marie <[email protected]> Date: Fri Jan 26 19:56:45 2024 -0800 split Tethys help files into smaller chunks commit dacfab07f52ffc47d2d94484b4043866ba7edd5a Merge: a6765d72 53ca798f Author: Douglas Gillespie <[email protected]> Date: Fri Jan 26 10:02:00 2024 +0000 Merge pull request #60 from PAMGuard/main Correct sorting of input sound files commit 53ca798f1b97b49800c312f2a92aa06ba36b827e Author: Douglas Gillespie <[email protected]> Date: Fri Jan 26 09:57:57 2024 +0000 Correct sorting of input sound files commit 88be6ffe2e6865434675031f62fe9754a9bcbee9 Author: Douglas Gillespie <[email protected]> Date: Thu Jan 25 18:04:57 2024 +0000 Messing around with checking of required fields in nilus objects. commit fe33930ca85cc0e3257d08bed19bf0b78f6a610c Author: Marie <[email protected]> Date: Wed Jan 24 11:50:20 2024 -0800 fixed anchor html problem commit fdfa9a20d8cdf65ab8f0f85909136c9940569f56 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 24 16:32:30 2024 +0000 Nilus Checker Can check a Nilus class to see if it's missing required objects and be used to remove empty fields (e.g. zero length strings) from an object. commit b78bbe8b9e300e8348e1a976357c4221162df68a Merge: c0080ae4 a6765d72 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 24 14:50:22 2024 +0000 Merge pull request #59 from douggillespie/main merge from main commit a6765d72b12a35a462d8b97c6b2d04c7ba6d0089 Merge: efdf17f6 5fcd3607 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 24 14:46:39 2024 +0000 Merge pull request #58 from PAMGuard/main Remove comments in split positioner commit 5fcd36073722bd1bab5b4e151e62e830bb3b1b12 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 24 14:46:05 2024 +0000 Remove comments in split positioner commit c0080ae4f431d2c2b5ae6a07d4585964de03f8e9 Merge: f1bb6e4c efdf17f6 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 24 14:37:24 2024 +0000 Merge remote-tracking branch 'origin/main' into Tethys Conflicts: src/help/JavaHelpSearch/DOCS src/help/JavaHelpSearch/DOCS.TAB src/help/JavaHelpSearch/OFFSETS src/help/JavaHelpSearch/POSITIONS src/help/JavaHelpSearch/SCHEMA src/help/JavaHelpSearch/TMAP src/help/utilities/tethys/docs/tethys_quickstart.html commit f1bb6e4c0c159cfc8385947950e14b5d6be3249a Author: Marie <[email protected]> Date: Tue Jan 23 14:33:50 2024 -0800 Documented new species search in help commit 971165b72e72a128728efa91db9012001c6bc5f2 Author: Douglas Gillespie <[email protected]> Date: Tue Jan 23 11:12:54 2024 +0000 Add species codes TOC in help commit 3d7224eb937746fd8cea51fbe46a1731ba949a99 Author: Douglas Gillespie <[email protected]> Date: Mon Jan 22 18:04:57 2024 +0000 Improved dialog for finding species codes Now has a progress bar to block GUI while searching database. commit 7d30b303e78d2217be03081a54893f31abcc0176 Author: Marie <[email protected]> Date: Sun Jan 21 15:24:13 2024 -0800 Data blocks help + species codes More help documentation on exporting detections/localization as well as mapping detection species codes to TSNs. Includes supporting images commit baff8d140c5794fd8be942d89328716044a9af22 Author: Douglas Gillespie <[email protected]> Date: Sun Jan 21 21:35:34 2024 +0000 System to search species codes Search the ITIS species codes in Tethys to find ITIS codes. Search can be on a common or scientific name. commit 54cb0d1b08cac63966df9666db055a95b5ff9ec5 Author: Douglas Gillespie <[email protected]> Date: Sun Jan 21 17:01:10 2024 +0000 Prevent single deployment export For now, disable the option to export a single Deployment document for multiple recording periods. commit 522253b489f3cf9e12666dc53ac93da131ffe7b2 Author: Douglas Gillespie <[email protected]> Date: Sun Jan 21 16:25:03 2024 +0000 Fix type in Deployment export commit 98bc7587b53d5e0915f50f477f928ac174c99a9d Merge: c8bc943f e0392de9 Author: Marie <[email protected]> Date: Sat Jan 20 20:01:19 2024 -0800 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commit c8bc943ff72dd8f2390a650eb682b66ca420a43d Author: Marie <[email protected]> Date: Sat Jan 20 20:01:05 2024 -0800 More help documentation Continued writing general export help. Added new css style Added image commit e0392de9c7de29ce4594f92b15280a392c3be2fa Author: Douglas Gillespie <[email protected]> Date: Fri Jan 19 17:29:12 2024 +0000 Removing empty fields Start of implementation of code that can remove empty fields from objects before they are written. commit 65300d719ad611f6da54e51de120fcfa7676c174 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 19 16:29:41 2024 +0000 Reporting outputs to user Use Pamguard WarnOnce system to show a message of success or failure after attempting to output to Tethys. commit fa02c9826cfb9005cab86de50474bdf85e43cc63 Merge: 3f2e4239 7efc8242 Author: Marie <[email protected]> Date: Thu Jan 18 19:37:29 2024 -0800 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commit 3f2e4239b012601e6c3fa75a7d06912f0f69ecfb Author: Marie <[email protected]> Date: Thu Jan 18 19:37:17 2024 -0800 added help details server connection & calibration commit efdf17f6516c18dd75c1d28228d45ce2c5f38b72 Merge: 02f1889e e5fda7f7 Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:39:55 2024 +0000 Merge pull request #57 from PAMGuard/main merge from main commit e5fda7f72a19634572fafc7fd8e1076d63d7869f Merge: 3ed9be4b 02f1889e Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:39:45 2024 +0000 Merge branch 'main' into main commit 3ed9be4bfdb1d6849fa39e0b205b886fde1b3ee9 Merge: 42b72960 43811c1f Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:36:56 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit 42b72960755f52864579e8c81d44cb912f22e56e Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:36:10 2024 +0000 Hide Tethys module and remove text output in splitpanepositioner commit 02f1889e3939d85311753e18ef90937da679c85e Merge: 0bc3968d 52bbff36 Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:33:26 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main Conflicts: src/binaryFileStorage/BinaryStore.java commit 43811c1f9b0d19bc59a5f6e45b960dfeffa6fe6f Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:31:00 2024 +0000 Merge from DG (#124) * claspath update * Batch processing Adding functionality for offline task batch processing. commit 52bbff36e59af92a0cb8aeb2bb69435f5f425cea Merge: 0c035aa0 b373e169 Author: Douglas Gillespie <[email protected]> Date: Thu Jan 18 09:29:50 2024 +0000 Merge pull request #56 from PAMGuard/main Merge from main commit 0bc3968dc86eb5edd418a7fb01b842c0c241f588 Merge: 52cc8c71 a3a74adb Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:28:02 2024 +0000 Fix err in binary store commit 0c035aa0fecf75c4df28c9cfa673f23aca17b249 Merge: 52cc8c71 a3a74adb Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:28:02 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard commit 52cc8c71775ce6e13d1ea500ccd60e0b04fed860 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:24:04 2024 +0000 Batch processing Adding functionality for offline task batch processing. commit b373e169f2ed822ad29c4620b61ce64cf4b3d818 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:13:14 2024 +0000 updating Tethys help (#123) commit 5d83af1d4283f1628cdec1350580c2aef915d4bd Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:11:31 2024 +0000 updating Tethys help (#122) commit 7efc82422640203566894bc53402d225fd135e63 Merge: d05cecaf bb17d384 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 21:11:13 2024 +0000 Merge branch 'main' into Tethys commit a3a74adb7873da24d91dc4dc03cd76fb9121f958 Merge: ac1a7f87 bb17d384 Author: Douglas Gillespie <[email protected]> Date: Wed Jan 17 14:37:30 2024 +0000 Merge pull request #55 from PAMGuard/main MErge from main commit d05cecaf8b475fbbe21f1ccf5d66a5ae33d9ec2d Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 18:57:38 2024 +0000 updating Tethys help commit 7a1c697319ead5d6d86cb75e7d16da0cb2e110cf Merge: 21fa4aff ac1a7f87 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 15:41:54 2024 +0000 Merge remote-tracking branch 'origin/main' into Tethys Conflicts: pom.xml src/PamController/PamguardVersionInfo.java commit bb17d384b34760e769316df72c8db3b0fa85e795 Merge: 031f4c7a 21fa4aff Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 15:34:05 2024 +0000 Merge branch 'Tethys' into main commit ac1a7f87ac614114e782b765d8154c35323f22db Merge: 133da119 031f4c7a Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 15:29:05 2024 +0000 Merge pull request #53 from PAMGuard/main changes from main commit 031f4c7ab4dd97ee94ec4fe022b4ebee88314ab5 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 15:28:23 2024 +0000 V 2.02.09aa with click marking bug fix commit 217283c704a4a5523a47ca7519df1f66f006a9cf Merge: 4856a827 46d01e62 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 11:58:31 2024 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard commit 4856a827dfe3cfb0c15a6124d16ca66308c7f7b6 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 11:57:11 2024 +0000 click labelling fixed a couple of problems in click labelling (Viewer mode) when clics were reassigned to different events. commit df178a41220a2ee4782231abe567528bf7c13fe2 Merge: 782057c0 133da119 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 10:16:35 2024 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit 133da119e0c8a4c1c96c2157077d70c3a51ac1cc Merge: f097ddce 46d01e62 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 10:16:12 2024 +0000 Merge pull request #52 from PAMGuard/main Merge from main commit 46d01e62db84bfc25a6b2447b46887e66a2a6d6e Merge: 0e5bca51 f097ddce Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 10:16:00 2024 +0000 Merge branch 'main' into main commit 0e5bca51983aaaa1b8b82b251034afd6f7793f04 Author: Douglas Gillespie <[email protected]> Date: Fri Jan 12 10:11:21 2024 +0000 Update X3 lib to 2.2.7 commit 21fa4aff078475202b5e7a7daaccae85cff854e2 Merge: 73810b85 716eb1fa Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 18:50:58 2023 +0000 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard.git into Tethys Conflicts: src/tethys/swing/TethysMainPanel.java commit 73810b85bf8fc1ebf5756f9ca9425005f87be5d8 Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 18:48:24 2023 +0000 use new diider location memory commit 7a5e8f103105b158b7aebe7fbc1902adc8510e52 Merge: e48eb002 f097ddce Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:39:28 2023 +0000 Merge branch 'main' into Tethys Conflicts: pom.xml src/PamController/PamguardVersionInfo.java commit e48eb002043691be805ecf0fc71121e3fa1539ef Merge: 70fbeaaf 1b8bb14e Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:37:02 2023 +0000 Merge remote-tracking branch 'upstream/main' into Tethys Conflicts: pom.xml src/loggerForms/FormsDataDisplayTable.java commit 70fbeaafdea7ff8c2c72dd8964a3a457797efc07 Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:32:57 2023 +0000 work on deployment wizards commit 782057c020a26dbb8845124bcb43283d2f6b5a7d Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:28:23 2023 +0000 claspath update commit 716eb1faa7fcceb0eaad95c4281d43917f407091 Merge: c63fb3f3 e29f6f05 Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:26:43 2023 +0000 Merge branch 'Tethys' of https://github.com/douggillespie/PAMGuard into Tethys commit c63fb3f341481caaacaace8928a3a704630c885a Merge: 56bab82b b7cbd259 Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:07:17 2023 +0000 Merge branch 'main' into Tethys Conflicts: src/loggerForms/FormsDataDisplayTable.java commit f097ddce45c03edf05b46e3e354a7baf4cdba44b Author: Douglas Gillespie <[email protected]> Date: Sat Dec 30 17:01:46 2023 +0000 Split pane positioner Handy little class for remembering and restoring the positions of jSplitPane's commit f5c3ce06cef0063937436b5708d3b17eeeebf60d Author: Douglas Gillespie <[email protected]> Date: Fri Dec 29 17:55:30 2023 +0000 Database opening from Explorer Sorted so that a viewer database can be opened by right clicking on a sqlite3 file. Requires updated installer to make appropriate registry changes. Will be in 2.02.10 commit e29f6f0589f42950a0826769c909821a6c9ed82b Author: Douglas Gillespie <[email protected]> Date: Fri Dec 22 13:38:18 2023 +0000 Fix Effort null pointers Trap a coupld of null pointer exceptions which get thrown when there are no acoustic data. commit 56bab82be37e55d5fda86518c4ff087f22c13276 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 21 18:34:58 2023 +0000 POM Excludes signature files Updated POM file to correctly exclude signature files which prevented PAMGuard from running from the installed version (unless these were manually removed from the jar file). commit 99aa3f342c33bdc67034a8231e1c25b2741c96ef Author: Douglas Gillespie <[email protected]> Date: Thu Dec 21 17:07:23 2023 +0000 Update nilus and javaclient Updated java client and nilus jar builds for Maven. commit f4a42d2bb2922120219889b9eacad6bf3ba8570e Author: Douglas Gillespie <[email protected]> Date: Thu Dec 21 11:22:01 2023 +0000 update pom to groupid tethys commit 1b8bb14e9d26f111df5eafc868454ccbf6e0c2da Author: Douglas Gillespie <[email protected]> Date: Wed Dec 20 16:47:18 2023 +0000 Pre release V2.02.09f With release notes for V2.02.10 which is coming soon ... commit f9a0716c0f66e569a8c10c1e422f994744ffd641 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 20 14:51:10 2023 +0000 Updates from DG (#120) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. * Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! * Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. * Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table * Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) * Fix small bugs * Fix settings import not all imports working. Now seems fixed. --------- Co-authored-by: Jamie Mac <[email protected]> commit b7cbd2592fb2bdca4ca4aee0b1031811b3875410 Merge: ae8839e7 639f3360 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 20 14:48:30 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit ae8839e7566e06877ab2d476f41efdf23f410335 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 20 14:48:15 2023 +0000 Fix settings import not all imports working. Now seems fixed. commit 639f33607e5fb2619a4d576c21daba50782e1bd3 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 20 09:05:33 2023 +0000 Fix small bugs commit 3e4dd77908f3e28689471b5ed21103fb23daa92e Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit 1d9768b8c102fe4f6fecaf78f109b65e545a524b Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit 2fa91d69a5dde9ae72a08c216883bcd1adb40938 Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit 1461808b1487378fab601df992af3aef7da30b29 Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 16:41:57 2023 +0000 Logger form plotting Fixed logger form plotting in Viewer so that points can find their correct GPS position (based on time) commit 54f5a5f0fb9c10f2b79774b167b9e7561ac999bf Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 15:54:38 2023 +0000 Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table commit 0085215eff2f850a3b98e2bbf202bbf1110ff985 Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 15:54:38 2023 +0000 Logger forms viewer Viewer display of logger forms was throwing exceptions on Boolean values which had been stored as a String or Integer 0 or 1 in some databases. Now fixed to turn these into a sensible boolean value for the data table commit ea6caecc679a40acc170c28ee4c86e414b1459c0 Merge: d200e5c2 bfbb58ea Author: Douglas Gillespie <[email protected]> Date: Tue Dec 19 12:45:56 2023 +0000 Updated POM working POM for build with Tethys. Note though that it's failing to get rid of all signature files in the \META-INF\ folder, so the two files META-INF\ECLIPSE_.SF and META-INF\ECLIPSE_.RSA must be removed before the jar file can be used. commit d200e5c2df101600324fb86943826a92fed3b7da Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 18:30:41 2023 +0000 Maven stuff for nilus and javaclient commit bfbb58ea5afeee61e66447eef112d66c47dd0921 Merge: 480f55f6 d1b40c1d Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 18:25:29 2023 +0000 Merge pull request #51 from PAMGuard/main get whistle det fix commit d1b40c1d86651d5f10e1638a866977351736eb1a Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 16:48:36 2023 +0000 Release V2.02.09e fixes to WMD stub removal to make it a lot faster. commit 3cf0a4e1e6fcc377be8cfeb6526388bc50599d16 Merge: 25d10d54 480f55f6 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 15:27:24 2023 +0000 Merge remote-tracking branch 'origin/main' into Tethys commit 291b00e1b1c5484a9fcc8be8caed7d8c04183a71 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 15:19:22 2023 +0000 Merge from DG with fixes to MatchedTemplate classifier. (#119) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. * Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! * Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. --------- Co-authored-by: Jamie Mac <[email protected]> commit 480f55f6e9b629f64cf6716e141033581e26bb58 Merge: 2f41c986 667b68e2 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 15:18:18 2023 +0000 Merge pull request #50 from PAMGuard/main merge from main (#118) commit 2f41c986f47bb00a89aae1b281ebcc240415fb2d Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 14:58:24 2023 +0000 Fix merge Merged in a single commit from Jamies fork that had updates to the template classifier. Then had to make a few changes to get it working with other changes J had made that must have been in other commits. commit 1b9d80b0ebbab36b19ed1340d75097cbd34a7a57 Author: Jamie Mac <[email protected]> Date: Thu Dec 14 12:06:51 2023 +0000 Bug fixes to Match Template classifier 1) When a large template was imported only 1: fftLength of the mathc waveform was used and so clicks would be correlated with noise. The peak of the template is now used when the peak search function is selected. 2) The plus button in the tab pane had disappeared. 3) Seems like the decimators were the wrong round. So the waveforms were using an up sample function when they should have been using a decimator function. and vice versa...major bug when using different sample rates! commit 667b68e231e538a3ddad567eddc7299e84cf9930 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 14:09:30 2023 +0000 merge from main (#118) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commit be88f4b2969c48670cf902c5d1d4c2d0c8203040 Merge: 0039ff74 7a321f6d Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 14:07:19 2023 +0000 # WARNING: head commit changed in the meantime Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit 7a321f6d95b01a842af84f6c735bc58a353f20ba Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 13:28:38 2023 +0000 Revert "Merge branch 'main' of https://github.com/PAMGuard/PAMGuard" This reverts commit f52a27ccf22f3abdb2665a56eea06972730d3443, reversing changes made to 4a5c6fe52ef9c4263fb5bcf75d40d3afff62fee9. commit f52a27ccf22f3abdb2665a56eea06972730d3443 Merge: 4a5c6fe5 f8d2de44 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 12:45:53 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard commit 4a5c6fe52ef9c4263fb5bcf75d40d3afff62fee9 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 18 12:45:49 2023 +0000 small fix in histograms small fix in histograms to avoid null commit 25d10d54b44dddd0aeb7d0da63fae882e363457a Author: Douglas Gillespie <[email protected]> Date: Sun Dec 17 19:28:03 2023 +0000 Start Tethys Help commit a761100ba776a68278dedf1ca572e5c16cc626d9 Merge: c3edae51 0039ff74 Author: Douglas Gillespie <[email protected]> Date: Sun Dec 17 12:52:36 2023 +0000 Merge remote-tracking branch 'origin/main' into Tethys commit c3edae516b8a08e62dcea118bdfbc983c02451f4 Author: Douglas Gillespie <[email protected]> Date: Sun Dec 17 12:52:06 2023 +0000 Small error handling commit f8d2de448274558e517f7fd4173bd6825b8e69d0 Author: Douglas Gillespie <[email protected]> Date: Sun Dec 17 12:27:31 2023 +0000 Settings import (#117) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. * Fix user input bug in viewer which created exponential copies of user comments! * Adding TAST trigger alarm action To be competed when GW provide correct string for interface * Echo offline detection Fix up affected datablocks for offline echo detection * fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commit 0039ff742287ab70bedab39735163a99800c3e9e Author: Douglas Gillespie <[email protected]> Date: Sun Dec 17 12:19:18 2023 +0000 fix module import System for importing modules from other psfx files was not working. Probably wasn't working for quite some time. Now fixed. commit 2e29e9cd95b47320eecbb57633756d5716f96e0f Author: Douglas Gillespie <[email protected]> Date: Fri Dec 15 17:49:39 2023 +0000 Deployment and Detections work Big tidy up of Deployment and Detections output. Think it' spretty close to a functional system now. commit 75d349e33c9051e9fdd7e722ed95f61a536f031b Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 18:52:17 2023 +0000 Echo offline detection Fix up affected datablocks for offline echo detection commit f55311ea36523828d1f04fc5723fae5a01ba1873 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 18:51:42 2023 +0000 Adding TAST trigger alarm action To be competed when GW provide correct string for interface commit 760b9769d720f46357aea4b098f7e9f46c14a83a Merge: 4297afdc 951e3116 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 12:43:07 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit 4297afdc51acf0b4cadb225b237be48851976965 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 12:42:41 2023 +0000 Fix user input bug in viewer which created exponential copies of user comments! commit 3059e087acf7ecbf6abeb7abf0dffe6192600788 Merge: 9a000586 87813746 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 12:27:14 2023 +0000 Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into Tethys commit 9a0005861cd3b82c976b7331d242d70b6c7b1c25 Merge: 951e3116 5b649edc Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 12:14:44 2023 +0000 Merge branch 'Tethys' of C:\Users\dg50\source\repos\PAMGuardTethys into Tethys commit 878137468563c855f05623f77664bca157613800 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 11:57:44 2023 +0000 Small changes to deployment table commit ef92e1eea98ea24fa2341eb68061297793f4739b Merge: 02ad66db 951e3116 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 10:53:46 2023 +0000 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit 951e3116a5ea872153b978064513f4e0fd2b624b Merge: 2dd90f6a b12ccf9c Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 10:51:17 2023 +0000 Merge pull request #48 from PAMGuard/main Merge from main commit b12ccf9c6706ca223ce963c279a5f72958188285 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 10:50:29 2023 +0000 Merge with main (#116) * Stop command small change so command is available as a constant * Lots of small updates to enable opening of a secondary configuration for batch processing control. commit 02ad66db3b0dab92886df4199822b7dfca13e5f7 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 14 10:33:46 2023 +0000 User input viewer bug PAMGuard was marking multiline comments as changed and then relogging them. Led to exponential increase in database size! commit 03483ded18b3834cfa24a54e9bca6954e4e1a61e Author: Douglas Gillespie <[email protected]> Date: Wed Dec 13 17:31:35 2023 +0000 Deployment export Improved deployment export interface and options. commit 860d1bec179cac7b57ef62adcaec67f69448a278 Author: Douglas Gillespie <[email protected]> Date: Thu Dec 7 20:08:17 2023 +0000 Update Calibration export Stop repeating hydrophones and add two addresses to Calibrations docs commit 9c86b41027116936c683c374b20c01d2399fce1d Author: Douglas Gillespie <[email protected]> Date: Thu Dec 7 15:10:45 2023 +0000 Project info dialog More wrapping of nilus objects to make a general project info tab in PAMGuard. This is global and can share basic project informatin with the Tethys module. commit 7721d7f1c01ff80edaeba7bd418ea56145b30901 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 6 17:35:57 2023 +0000 Global metadata Reorganised how global meta data for a PAMGuard dataset is managed by wrapping a nilus deployment object so that PAMGuard settings can serialise and unpack the xml version of a nilus Deployment object. commit bafe93e7f54ceb38859b610d6aa1bc7ee13be501 Author: Douglas Gillespie <[email protected]> Date: Wed Dec 6 12:20:40 2023 +0000 SQLLogging revert Revert main table definition class used by SQLLogging to PamTableDefinition, back from EmptyTableDefinition, to maintain compatibility with existing plugin modules. commit 9939e8aa859b537685e07ede21c2898622c8fc62 Author: Douglas Gillespie <[email protected]> Date: Mon Dec 4 21:27:00 2023 +0000 Calibrations Export Functional Calibrations export wizard and display commit 275a53c042d0ced3761433a11b2783bc3d05878f Author: Douglas Gillespie <[email protected]> Date: Sun Dec 3 18:21:09 2023 +0000 Calibrations display display of calibrations documents + some general tidying up of document management and display. commit 840e6c89a1fe2a1029b1b8c5c1d5419e7baec581 Author: Douglas Gillespie <[email protected]> Date: Thu Nov 16 20:36:14 2023 +0000 R2.02.09d Fix matched template classifier import fix azigram help file image display commit 2dd90f6a32b218648d89dd778f615be6681311d1 Merge: 58fe0d77 acc806d3 Author: Douglas Gillespie <[email protected]> Date: Wed Nov 15 15:02:50 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit 58fe0d7754e03a2e69bfd4269c09e9a206c61460 Author: Douglas Gillespie <[email protected]> Date: Wed Nov 15 15:02:18 2023 +0000 Lots of small updates to enable opening of a secondary configuration for batch processing control. commit acc806d375b484323e23ccfd02435a3b667ff7b3 Author: Douglas Gillespie <[email protected]> Date: Wed Nov 15 13:08:02 2023 +0000 Updated X3 library to 2.2.6 commit a4f484c76c17c761d779f52c1a8dddafdc03dcd5 Merge: 8e60ad2e d7c4c278 Author: Douglas Gillespie <[email protected]> Date: Wed Nov 15 09:44:09 2023 +0000 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit 8e60ad2eff108c29bcb024a5f9ca3b2ef4fe20ae Author: Douglas Gillespie <[email protected]> Date: Wed Nov 15 09:43:39 2023 +0000 update to array diagnostics and sensor control commit d7c4c278d806b3ab4effe45153079fc4792ce764 Author: m2oswald <[email protected]> Date: Wed Nov 15 09:17:49 2023 +0000 Added code to Rocca for training/testing classifier (#114) * allow Rocca to run without classifiers Fixed bug that threw an error if no classifier files were specified in Rocca Params dialog * add rocca switch to enable dev mode currently only shows/hides extra buttons in the Params dialog, but will extend to more options in the future * Fix memory issue with RoccaContourDataBlocks not being released for garbage collection Set RoccaContourDataBlock objects to null and stop PamObserver Timer to force release * Fix problem tracing whistles in Rocca spectrogram pop-up Whistle and raw data were being cleared before the user had time to trace out the whistle, causing PAMGuard to throw an exception. Both were already being cleared when the pop-up window is closed, so no need to do it here. * updated for training/testing classifiers commit d5f504dcd1a28fcf88d18b7624826e0e1d325ab9 Author: Douglas Gillespie <[email protected]> Date: Fri Nov 10 18:08:31 2023 +0000 Bearing localiser offline save Bug stopping it correctly saving data from the offline task to the database fixed. commit 6cc01fe77a4c0d6dd8ae5c386ae1522c02218d01 Merge: 1f8e790a 9fca879c Author: Douglas Gillespie <[email protected]> Date: Fri Oct 27 10:06:52 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit 9fca879c3967243b32abe8e581eacb4aedc249c9 Merge: bff8eeeb 7a44d49e Author: Douglas Gillespie <[email protected]> Date: Fri Oct 27 10:02:47 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit 7a44d49e27189d2a1049662ae9f6e1dce81a098f Author: Douglas Gillespie <[email protected]> Date: Fri Oct 27 09:59:28 2023 +0100 X3 Version 2.2.3 Add maven jar files for X3/SUD version 2.2.3 commit bff8eeebc56d636a5dfa3f87f7b0e2ed754b0ab8 Merge: 3da3f31b fa5fe994 Author: Douglas Gillespie <[email protected]> Date: Thu Oct 26 15:50:26 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard.git into main commit fa5fe9943db6b10a64f563b8a05917f12341182c Author: Douglas Gillespie <[email protected]> Date: Thu Oct 26 14:44:41 2023 +0100 update sud file management to more efficiently skip to the correct part of a sud file when reading data offline. commit 1f8e790ae5c8008df4967146d4977ec82d2c8a0d Author: Douglas Gillespie <[email protected]> Date: Fri Sep 29 13:43:49 2023 +0100 Collection enum Made an enum for the different collections. More robust than passing the names around as strings. Contains functions for converting between the collection name and the documents names within those collections. commit 773f1f542b3d41842df6aa2cb77c857fa686705c Author: Douglas Gillespie <[email protected]> Date: Sun Sep 24 21:59:15 2023 +0100 Species map i/o commit 8257122d140f1834cfbb2dfdf8d223a385a0515c Author: Douglas Gillespie <[email protected]> Date: Thu Sep 21 18:01:41 2023 +0100 Log Tethys output and include instrumentid in Deployment queries commit 4d294b56a8673a3f938f87b6be3237e234804a17 Author: Douglas Gillespie <[email protected]> Date: Tue Sep 19 16:55:33 2023 +0100 Click event output commit 5fe0927c107da95ad53674f3d1986bb4f1e5e579 Author: Douglas Gillespie <[email protected]> Date: Mon Sep 18 12:49:39 2023 +0100 Noise logging commit 415ec87938d5e7d76e2d9c7735826d3e42738695 Author: Douglas Gillespie <[email protected]> Date: Sun Sep 17 21:10:23 2023 +0100 noise output commit 158eedce8c06d47719c49a97f6ea6d2f8446ce7c Author: Douglas Gillespie <[email protected]> Date: Fri Sep 15 15:15:28 2023 +0100 Detections output more work on detections output. commit db1cc75bc1f96e39f49eaf0278b38fea801e6846 Author: Douglas Gillespie <[email protected]> Date: Wed Sep 13 17:28:47 2023 +0100 More output More changes to Detections output. commit 85fd84d18ace66f4c675ea7c0e07db794ebf3c96 Author: Douglas Gillespie <[email protected]> Date: Mon Sep 11 21:52:46 2023 +0100 Fix binned output couple of fixes in binned output commit 65dfb5688b7fb8374dd0bb6b48dec2c565fe8c16 Author: Douglas Gillespie <[email protected]> Date: Mon Sep 11 17:47:50 2023 +0100 More on granularity Nice format of granularity in display tables. commit c221d78aa276cd9d63f560b77c8c5925121bd197 Author: Douglas Gillespie <[email protected]> Date: Mon Sep 11 17:07:15 2023 +0100 Added bin granularity binned granularity in place. TODO Encounter granularity. commit baca001ed87f467512f5ff08f050d7ba106b1449 Author: Douglas Gillespie <[email protected]> Date: Fri Sep 8 16:31:00 2023 +0100 Param output only if not display commit 74652431692c47a6ed41f5b4a304ac06f8f87599 Merge: fb00a757 3da3f31b Author: Douglas Gillespie <[email protected]> Date: Fri Sep 8 13:32:22 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit 3da3f31b33525132b53b2dd4275417c64fa5a9ca Merge: dbeaa668 3385935a Author: Douglas Gillespie <[email protected]> Date: Fri Sep 8 13:29:37 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard.git into main commit dbeaa66821a049a597eb43c63fec49e785998520 Merge: 1b5454be 60435e56 Author: Douglas Gillespie <[email protected]> Date: Fri Sep 8 13:26:11 2023 +0100 Merge branch 'main' of https://github.com/PAMGuard/PAMGuard into main commit 60435e567a9e38a7c47c2f0df21f3147e15d5e74 Author: Brian S Miller <[email protected]> Date: Fri Sep 8 21:54:40 2023 +1000 Fixes issues #111 and fixes #112 (DIFAR module crashes and ability to use Deep Learning Detections in DIFAR module) (#110) * Bugfix for OverlayMarks Check for a null pointer exception in OverlayMarks that was causing a crash on startup. * Bugfix for null pointer in symbol manager Fix a bug that I found where the DIFAR module was crashing the symbol manager. Seems that this was due to this subclass of clip generator having a null value for it's uniqueName. I've fixed by checking for null values and assigning a generic symbol when null. * DeepLearning detections canGenerateClips=true Set flag in DeepLearning detector so that detections are considered 'clips' by Pamguard. This allows them to be processed automatically in the DIFAR Localisation module (and maybe others). * DIFAR: bugfix frequency limits for auto-detections Fix a bug in DIFAR module where the frequency limits of automated detections were not being set properly by the DIFAR module. * DeepLearning - Bugfix to detection duration Fix bug in deep learning detector where duration (in samples) was being set to number of samples in a hop instead of the number of samples in a segment. commit fb00a757cd4e15b70dd87cdae759adea8b50f65b Author: Douglas Gillespie <[email protected]> Date: Thu Sep 7 16:58:38 2023 +0100 Data export A few fixes in Detections export. commit 3688719e25b89f41add4182fdd6ef1fcf4a16660 Author: Douglas Gillespie <[email protected]> Date: Thu Aug 31 17:06:51 2023 +0100 Working parameter output Only just and not complete, but working. commit 07ced6ae6d8db75f95c7d3aec3a42eb8209fbe0f Author: Douglas Gillespie <[email protected]> Date: Tue Aug 29 11:53:40 2023 +0100 Species info Sort out of species info which hopefully now deals with all eventualities. commit 74deebe446e3ccb1ac05b1834ed4e7bad6c2b49a Author: Douglas Gillespie <[email protected]> Date: Tue Aug 8 18:29:45 2023 +0100 Fixed queries Also added internal display of existing docuemtns (so they can be deleted) commit 901817689910b6c39dcd3b780615f81527edc961 Author: Douglas Gillespie <[email protected]> Date: Thu Jul 20 19:06:42 2023 +0100 ITIS Codes GUI Basic system in place for handling ITIS species codes. commit 5c969d888975a4f2f79c9011f25ef6bfd5352c01 Author: Douglas Gillespie <[email protected]> Date: Wed Jul 19 13:56:39 2023 +0100 work on species mapping commit 527aeccbb8c44ec65f58570e9f67cdf74eff3da1 Merge: cd70026c 3385935a Author: Douglas Gillespie <[email protected]> Date: Mon Jul 3 18:00:53 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit cd70026cf8c6fd13c9a9ad3d031c47c007a072ef Author: Douglas Gillespie <[email protected]> Date: Mon Jul 3 17:53:35 2023 +0100 Starting to map species codes commit 3385935aec458df2a1cfbda10b9c3ed234f0c936 Merge: 68b2f3bb c3c31c33 Author: Douglas Gillespie <[email protected]> Date: Mon Jul 3 17:48:41 2023 +0100 Merge pull request #47 from PAMGuard/main pull from main commit 75470b450b53f7c37b4a01655e993918ea20f563 Merge: f3944e35 68b2f3bb Author: Douglas Gillespie <[email protected]> Date: Fri Jun 9 13:01:35 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main Conflicts: src/PamModel/PamModel.java commit f3944e35361842672c7d35148cf76b2a45a1cf86 Author: Douglas Gillespie <[email protected]> Date: Fri Jun 9 12:56:23 2023 +0100 Update FolderInputSystem.java commit 68b2f3bb538e70b53b8ad3f4e06f28376d67a769 Merge: 1b5454be b0a06300 Author: Douglas Gillespie <[email protected]> Date: Fri Jun 9 12:53:30 2023 +0100 Merge pull request #46 from PAMGuard/main get V2.02.08 from main commit 3df05c3ec61298b5058dcb05c0cb6a4aba0d8815 Author: Douglas Gillespie <[email protected]> Date: Mon May 29 15:27:21 2023 +0100 Document export commit 36da1bcbeb1770d96ca8d12532233d7a7574d7d9 Merge: 1ea20d80 1b5454be Author: Douglas Gillespie <[email protected]> Date: Mon May 29 09:02:48 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit 1b5454be9179f1ecce2e6b4796611f2fba5be79d Author: Douglas Gillespie <[email protected]> Date: Fri May 26 10:27:25 2023 +0100 Stop command small change so command is available as a constant commit d8419591713f273baac411faa112d6996e247376 Merge: f97f967b d350d5a7 Author: Douglas Gillespie <[email protected]> Date: Fri May 26 09:53:08 2023 +0100 Merge pull request #45 from PAMGuard/main pull from main commit f97f967b237c8cc33b2dd26a723b019cbe9844e4 Merge: 508ca524 c17208d3 Author: Douglas Gillespie <[email protected]> Date: Tue May 23 15:46:57 2023 +0100 Merge pull request #44 from PAMGuard/main Map file errors commit 508ca524e8be4437598b8201be556d578c881c9c Merge: becb24dc db037c6d Author: Douglas Gillespie <[email protected]> Date: Fri May 12 15:38:04 2023 +0100 Merge pull request #43 from PAMGuard/main update from main commit 1ea20d80ed1702e6e58f6e6d3dd7c0e973b9816e Merge: 49843b40 becb24dc Author: Douglas Gillespie <[email protected]> Date: Mon May 8 15:46:04 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit becb24dcc5907c56462e9ea849d48be969c33bf3 Merge: 2953d82b 29f0bf7e Author: Douglas Gillespie <[email protected]> Date: Mon May 8 15:43:58 2023 +0100 Merge pull request #42 from PAMGuard/main X3 updates commit 49843b405fbdb8c502eaf3db805c71a0e8cc4489 Author: Douglas Gillespie <[email protected]> Date: Sun May 7 20:06:59 2023 +0100 Some query changes Changes in server code required update of some of the json for existing queries. commit 00410d20179a1ada8d87b1212b2c760902c510a2 Author: Douglas Gillespie <[email protected]> Date: Sun May 7 19:00:37 2023 +0100 Exception handling Exception handling and warning messages on Tethys transactions commit 71c8415bc87a32bb99c39f71c8948c902931792a Author: Douglas Gillespie <[email protected]> Date: Sat May 6 19:26:04 2023 +0100 Playing with export options commit 38b05b13c54a0f86f80119123c4f757dc51be1c9 Merge: 8a9719b4 2953d82b Author: Douglas Gillespie <[email protected]> Date: Sat May 6 11:15:48 2023 +0100 Merge branch 'main' of https://github.com/douggillespie/PAMGuard into main commit 8a9719b425144868f6807c711e556db75604d1eb Author: Douglas Gillespie <[email protected]> Date: Mon May 1 18:55:35 2023 +0100 Tethys working again And a bit more playing around with metadata handling for Deploymnet documents commit 379cd61afa54dedfec45cad8b0de0e661c9015ab Merge: 4f0f4a6c f74bb5eb Author: Douglas Gillespie <[email protected]> Date: Mon Apr 24 13:35:51 2023…

douggillespie added a commit that referenced this issue May 8, 2023

Merge pull request #42 from PAMGuard/main (#106)

88b0342

douggillespie added a commit that referenced this issue Jan 12, 2024

Merge pull request #42 from PAMGuard/main

becb24d

X3 updates

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Building from source #42

Building from source #42

uwgeophys commented Jul 25, 2022

douggillespie commented Jul 26, 2022

Building from source #42

Building from source #42

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uwgeophys commented Jul 25, 2022

douggillespie commented Jul 26, 2022