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I am trying to run gencore on sorted RNA reads mapped with STAR. The input bam file is 708 MB. The reference genome is 22MB.
Here is the command I used to run gencore:
Hi
I am trying to run gencore on sorted RNA reads mapped with STAR. The input bam file is 708 MB. The reference genome is 22MB.
Here is the command I used to run gencore:
It reads in the ref file great, then it lists all the contigs present in the BAM file. Then it crashes:
Starting contig 0
Segmentation fault (core dumped)
I installed gencore using conda.
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