{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":593624410,"defaultBranch":"devel","name":"biosimspace","ownerLogin":"OpenBioSim","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-01-26T13:27:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/24919650?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719239093.0","currentOid":""},"activityList":{"items":[{"before":"9c29ac6f3a5ff9c742e50f0f7ffad693120ea380","after":"8d9315c6485988600fe4ffcdb9c7df966b84e7f1","ref":"refs/heads/feature_AToM_2","pushedAt":"2024-06-27T10:37:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"fixed imports","shortMessageHtmlLink":"fixed imports"}},{"before":"a6eb09061859074133a70471e8b550818ec629d1","after":"9c29ac6f3a5ff9c742e50f0f7ffad693120ea380","ref":"refs/heads/feature_AToM_2","pushedAt":"2024-06-24T14:27:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"Deleted redundant functionality","shortMessageHtmlLink":"Deleted redundant functionality"}},{"before":null,"after":"a6eb09061859074133a70471e8b550818ec629d1","ref":"refs/heads/feature_AToM_2","pushedAt":"2024-06-24T14:24:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"Continued refactor.\n\nMain addition is option to run with both MBAR and UWHAM analysis options","shortMessageHtmlLink":"Continued refactor."}},{"before":"b5a8209217973637a67a9623c1ca48c308bc8a4b","after":"81b48f0d28208567c387673fb6acbd36c30936d1","ref":"refs/heads/devel","pushedAt":"2024-06-24T10:57:14.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #305 from akalpokas/devel\n\nFix align function docstrings [ci skip]","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2369912909\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/305\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/305/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/305\">#305</a> from akalpokas/devel"}},{"before":"b3244b135da1d1af0b210964e2512ae962e18675","after":null,"ref":"refs/heads/backport_302","pushedAt":"2024-06-18T14:28:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"04b4c4256fbdc47e22ad9bdf0fbbcbe7eded9e33","after":"800e00f9b0b344ae3ec9afe0c18b9e2fbafe5c21","ref":"refs/heads/main","pushedAt":"2024-06-18T14:28:12.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #303 from OpenBioSim/backport_302\n\nBackport fix from PR #302","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2359893986\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/303\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/303/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/303\">#303</a> from OpenBioSim/backport_302"}},{"before":null,"after":"b3244b135da1d1af0b210964e2512ae962e18675","ref":"refs/heads/backport_302","pushedAt":"2024-06-18T13:37:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Backport fix from PR #302. [ci skip]","shortMessageHtmlLink":"Backport fix from PR <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2359626061\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/302\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/302/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/302\">#302</a>. [ci skip]"}},{"before":"7de4c4e81ac5240bdd49a3be479d2d751d96734f","after":null,"ref":"refs/heads/fix_zero_dummy_torsions","pushedAt":"2024-06-18T13:35:26.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"6b2347335ab880e10f82672023af7f51ad252d97","after":"b5a8209217973637a67a9623c1ca48c308bc8a4b","ref":"refs/heads/devel","pushedAt":"2024-06-18T13:35:23.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #302 from OpenBioSim/fix_zero_dummy_torsions\n\nExpose torsion modification kwargs","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2359626061\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/302\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/302/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/302\">#302</a> from OpenBioSim/fix_zero_dummy_torsions"}},{"before":"69737071d5701a052fb6bb156752047e9849d269","after":"7de4c4e81ac5240bdd49a3be479d2d751d96734f","ref":"refs/heads/fix_zero_dummy_torsions","pushedAt":"2024-06-18T11:24:23.000Z","pushType":"push","commitsCount":43,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge branch 'devel' into fix_zero_dummy_torsions","shortMessageHtmlLink":"Merge branch 'devel' into fix_zero_dummy_torsions"}},{"before":"3df86f9ef01d3a2f2e5daf8a110f143fd65125f5","after":"6b2347335ab880e10f82672023af7f51ad252d97","ref":"refs/heads/devel","pushedAt":"2024-06-18T11:21:36.000Z","pushType":"pr_merge","commitsCount":42,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #294 from akalpokas/feature_protein_FEP_2\n\nAdd mapping, merging, and alignment functionality for protein FEP.","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2308630433\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/294\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/294/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/294\">#294</a> from akalpokas/feature_protein_FEP_2"}},{"before":null,"after":"69737071d5701a052fb6bb156752047e9849d269","ref":"refs/heads/fix_zero_dummy_torsions","pushedAt":"2024-06-17T12:44:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Expose dummy torsion modification options for SOMD.","shortMessageHtmlLink":"Expose dummy torsion modification options for SOMD."}},{"before":"fb4be17f67b61d94ce419fdc8bd0b7fc5d138486","after":null,"ref":"refs/heads/backport_295_298_300","pushedAt":"2024-06-17T10:33:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"90c2d0f3e9e6255e2b26b58cfab340c42f1f413e","after":"04b4c4256fbdc47e22ad9bdf0fbbcbe7eded9e33","ref":"refs/heads/main","pushedAt":"2024-06-17T10:33:50.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #301 from OpenBioSim/backport_295_298_300\n\nBackport fixes from #295, #298, and #300","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2356724861\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/301\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/301/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/301\">#301</a> from OpenBioSim/backport_295_298_300"}},{"before":null,"after":"fb4be17f67b61d94ce419fdc8bd0b7fc5d138486","ref":"refs/heads/backport_295_298_300","pushedAt":"2024-06-17T08:25:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Backport fix from PR #300. [ci skip]","shortMessageHtmlLink":"Backport fix from PR <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2349105545\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/300\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/300/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/300\">#300</a>. [ci skip]"}},{"before":"fbe424908e4d40ef6aaaf68f9e525a7717779f2b","after":null,"ref":"refs/heads/fix_299","pushedAt":"2024-06-17T08:19:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"e877dc8a9785ac43be9cb709963959be55fdb5ef","after":"3df86f9ef01d3a2f2e5daf8a110f143fd65125f5","ref":"refs/heads/devel","pushedAt":"2024-06-17T08:19:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #300 from OpenBioSim/fix_299\n\nFix issue #299","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2349105545\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/300\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/300/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/300\">#300</a> from OpenBioSim/fix_299"}},{"before":"5aacbcfd3ad8b40eea77db040de4ea625465a9ee","after":null,"ref":"refs/heads/fix_297","pushedAt":"2024-06-17T08:19:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"c171e8307849663b2b0dec89e3c2cd4717fea845","after":"e877dc8a9785ac43be9cb709963959be55fdb5ef","ref":"refs/heads/devel","pushedAt":"2024-06-17T08:18:58.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #298 from OpenBioSim/fix_297\n\nFix issue #297 [ci skip]","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2348150695\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/298\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/298/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/298\">#298</a> from OpenBioSim/fix_297"}},{"before":"0c22782d55e79af8ca770f7441aa51d11909da09","after":null,"ref":"refs/heads/fix_ghost_sigmas","pushedAt":"2024-06-17T08:18:39.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"}},{"before":"598a67435a5ff53da140a3f9884621976b729cb6","after":"c171e8307849663b2b0dec89e3c2cd4717fea845","ref":"refs/heads/devel","pushedAt":"2024-06-17T08:18:35.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Merge pull request #295 from OpenBioSim/fix_ghost_sigmas\n\nDon't perturb LJ sigma for ghost atoms. [ci skip]","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2313068499\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/295\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/OpenBioSim/biosimspace/pull/295/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/pull/295\">#295</a> from OpenBioSim/fix_ghost_sigmas"}},{"before":null,"after":"fbe424908e4d40ef6aaaf68f9e525a7717779f2b","ref":"refs/heads/fix_299","pushedAt":"2024-06-12T15:42:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Don't wrap the fileformat string. [closes #299]","shortMessageHtmlLink":"Don't wrap the fileformat string. [<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #299.\">closes</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2348972789\" data-permission-text=\"Title is private\" data-url=\"https://github.com/OpenBioSim/biosimspace/issues/299\" data-hovercard-type=\"issue\" data-hovercard-url=\"/OpenBioSim/biosimspace/issues/299/hovercard\" href=\"https://github.com/OpenBioSim/biosimspace/issues/299\">#299</a>]"}},{"before":null,"after":"5aacbcfd3ad8b40eea77db040de4ea625465a9ee","ref":"refs/heads/fix_297","pushedAt":"2024-06-12T08:26:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Fix docstring for parameterisation function return types.\n[ci skip] [closes #297]","shortMessageHtmlLink":"Fix docstring for parameterisation function return types."}},{"before":"dc50f26f2ceca3fed246cc8cdf92fcbda8af8ecd","after":"0c22782d55e79af8ca770f7441aa51d11909da09","ref":"refs/heads/fix_ghost_sigmas","pushedAt":"2024-06-04T09:00:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Make zero LJ sigma check consistent with Sire.","shortMessageHtmlLink":"Make zero LJ sigma check consistent with Sire."}},{"before":"606dc055fbab3c1026cdcdd1d15628571e2d36e3","after":"dc50f26f2ceca3fed246cc8cdf92fcbda8af8ecd","ref":"refs/heads/fix_ghost_sigmas","pushedAt":"2024-06-03T13:31:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lohedges","name":"Lester Hedges","path":"/lohedges","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/648557?s=80&v=4"},"commit":{"message":"Set all zero LJ sigma values to the opposite end state.","shortMessageHtmlLink":"Set all zero LJ sigma values to the opposite end state."}},{"before":"d56b67686783f2f61da96db026242f42589bf845","after":"a409e176e36c3b21d408b17208616b21bf52d43b","ref":"refs/heads/feature_AToM","pushedAt":"2024-06-03T09:26:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"Remove redundant imports","shortMessageHtmlLink":"Remove redundant imports"}},{"before":"eb022e39aae31ba4ffffd60e1c2a558ff5c1a163","after":"d56b67686783f2f61da96db026242f42589bf845","ref":"refs/heads/feature_AToM","pushedAt":"2024-05-28T15:00:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"Switched print statements to proper warnings","shortMessageHtmlLink":"Switched print statements to proper warnings"}},{"before":"d05337d907561dcbdd055a50f519be3c9555b000","after":"eb022e39aae31ba4ffffd60e1c2a558ff5c1a163","ref":"refs/heads/feature_AToM","pushedAt":"2024-05-28T14:42:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"Removes redundant print statement","shortMessageHtmlLink":"Removes redundant print statement"}},{"before":"5d31596379d8a4c8c27c3dfb5af3781255764a4d","after":"d05337d907561dcbdd055a50f519be3c9555b000","ref":"refs/heads/feature_AToM","pushedAt":"2024-05-28T14:39:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"fixed issue with setting protein index","shortMessageHtmlLink":"fixed issue with setting protein index"}},{"before":"fcda8edc140cdd036607600c3cac45ab19db93c3","after":"5d31596379d8a4c8c27c3dfb5af3781255764a4d","ref":"refs/heads/feature_AToM","pushedAt":"2024-05-28T13:16:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mb2055","name":"Matthew Burman","path":"/mb2055","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53092770?s=80&v=4"},"commit":{"message":"remove redundant print statement","shortMessageHtmlLink":"remove redundant print statement"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEcLNjKgA","startCursor":null,"endCursor":null}},"title":"Activity · OpenBioSim/biosimspace"}