-
Notifications
You must be signed in to change notification settings - Fork 9
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Cannot create a simulation from BBs after opening a V11 project #1354
Comments
It seems that The neighborhood keywords are not replaced here: Those specific keywords are expanded not in KeywordReplacer but in the FormulaTask. I tried to fix it by calling the proper method from the FormulaTask: Not sure how to proceed. Maybe @msevestre can comment on this? |
I am getting this error now: @PavelBal |
1 similar comment
Albumin is not present in the Intracellular compartments: So it should not be present in this neighborhood. The weird thing is that So the PV BB is not properly applied. |
Okay, this is happening because every BB has been put into a separate module. So when creating a simulation, the parameter is first calculated by the equation and only later is overwritten by the fixed value stored in the PV. I have updated the MoBi project in the repo and put all the required BBs (except for the Reactions because of #1376) in the "Spatial Stucture" module. Trying to create a simulation from the modules "Spatial Structure" and "Reaction" will give the initial error about "another formula for parameter" |
I don't understand this. BB in one module works but BB in different module does not? |
Yes this is something else. I simplified the project too much.. I think your fix will work, once it is merged I will try it with this project and update it accordingly. |
Trying to re-configure a simulation or create a new from existing modules, I get the error:
The text was updated successfully, but these errors were encountered: