-
Notifications
You must be signed in to change notification settings - Fork 17
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
FDR ISSUE #464
Comments
Can you share the whole log file with us? Just want to know how many initial identifications before applying FDR filtering. |
log_2023-09-24_20-19-02.txt
<https://drive.google.com/file/d/1oLomE4NAW9wxK5RGOGgraAkUYpPxhAgz/view?usp=drive_web>
Hi Yamei,
Here you go.
Best Kieran
…On Mon, 25 Sept 2023 at 19:40, Yamei Deng ***@***.***> wrote:
Can you share the whole log file with us? Just want to know how many
initial identifications before applying FDR filtering.
—
Reply to this email directly, view it on GitHub
<#464 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AUPV2DX3TIRDDHJ2UAYLYQLX4HFYHANCNFSM6AAAAAA5DLZZ34>
.
You are receiving this because you authored the thread.Message ID:
***@***.***>
|
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi Fengchao,
Hope you are well. I had an error see below, Do you suggest changing the fdr from 0.01 to 0.05 in the "fdr filter and report"section of the "validation tab" and if so is this okay.
ERRO[21:06:13] the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter
Process 'PhilosopherFilter' finished, exit code: 2
Process returned non-zero exit code, stopping
The text was updated successfully, but these errors were encountered: