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Dear Sir
Following my earlier message in the discussion forum, here is my update:
I load a brain MRI image using ants library using its image_read() function. A slice of the image is attached to this message(InitialSlice.png).
I obtain the brain image mask(Skull Stripping) using 2 methods:
a) Image registration with a template image using ants library
b) Deep net using AntsPyNet
A slice of the masked image is attached to the message(MaskedSlice.png)
I apply the mask to the original image to obtain the contour of the mask shown in image RegionOfInterestContour.png
I can get the bounding box of the mask using sitk library(LabelShapeStatisticsImageFilter).
I look forward to your comments and suggestions for the next steps.
Regards
Rishabh Ranjan
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Dear Sir
Following my earlier message in the discussion forum, here is my update:
a) Image registration with a template image using ants library
b) Deep net using AntsPyNet
A slice of the masked image is attached to the message(MaskedSlice.png)
I look forward to your comments and suggestions for the next steps.
Regards
Rishabh Ranjan
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