{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":40187375,"defaultBranch":"main","name":"MultiQC","ownerLogin":"MultiQC","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-08-04T13:47:05.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/18548644?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717939895.0","currentOid":""},"activityList":{"items":[{"before":"3ecac912f55093411825f6818469295de50225bf","after":"a2d3622c98563c13fa0d178f28ece3066b85c6ed","ref":"refs/heads/main","pushedAt":"2024-06-11T18:32:43.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Update salmon.py to fix strand info issue (#2617)\n\n* Update salmon.py to fix strand info issue\r\n\r\n* Pre-commit fix","shortMessageHtmlLink":"Update salmon.py to fix strand info issue (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2346827876\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2617\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2617/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2617\">#2617</a>)"}},{"before":"dea1701f1ea5b3fd1c14637d240ca2cfd2440277","after":null,"ref":"refs/heads/flat-threshold","pushedAt":"2024-06-09T13:31:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"b6e86416e89762c69d2a76e524653f748b7413e7","after":"3ecac912f55093411825f6818469295de50225bf","ref":"refs/heads/main","pushedAt":"2024-06-09T13:31:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Flat plot legend tweaks (#2615)\n\n* Increase flat threshold to 1000\r\n\r\n* Do not show legend in FastQC line plots in flat mode if the status checks are enabled\r\n\r\n* Allow override line plots pconfig.showlegend. Default to not show if #lines is >250","shortMessageHtmlLink":"Flat plot legend tweaks (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2342253156\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2615\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2615/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2615\">#2615</a>)"}},{"before":"2ca28ac64c5ec25f2cce89159ff4b78600838ad9","after":"dea1701f1ea5b3fd1c14637d240ca2cfd2440277","ref":"refs/heads/flat-threshold","pushedAt":"2024-06-09T13:27:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Allow override line plots pconfig.showlegend. Default to not show if #lines is >250","shortMessageHtmlLink":"Allow override line plots pconfig.showlegend. Default to not show if …"}},{"before":"463f15c346baf7f4480d9b008df955238e803da6","after":"2ca28ac64c5ec25f2cce89159ff4b78600838ad9","ref":"refs/heads/flat-threshold","pushedAt":"2024-06-09T13:02:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Do not show legend in FastQC line plots in flat mode if the status checks are enabled","shortMessageHtmlLink":"Do not show legend in FastQC line plots in flat mode if the status ch…"}},{"before":null,"after":"463f15c346baf7f4480d9b008df955238e803da6","ref":"refs/heads/flat-threshold","pushedAt":"2024-06-09T12:56:32.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Increase flat threshold to 1000","shortMessageHtmlLink":"Increase flat threshold to 1000"}},{"before":"59b1623b336585bd0925caa6927ba10d6ea61456","after":"b6e86416e89762c69d2a76e524653f748b7413e7","ref":"refs/heads/main","pushedAt":"2024-06-09T12:15:26.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix 'pecent' typo (#2612)","shortMessageHtmlLink":"Fix 'pecent' typo (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2338615858\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2612\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2612/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2612\">#2612</a>)"}},{"before":"1dcf6cf76935a0b7f16c5285d4876269eb8fe516","after":"59b1623b336585bd0925caa6927ba10d6ea61456","ref":"refs/heads/main","pushedAt":"2024-06-09T12:14:49.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"UMI-tools extract module: Improve plots (#2614)\n\n* Modify UMI-tools extract plots and data presentation.\r\n\r\n* Split umi-extract regex plot.\r\n\r\n* Polishing the UMI-tools extract plots.\r\n\r\n* Only plot regex plot, if we have the corresponding data in the first place.\r\n\r\n---------\r\n\r\nCo-authored-by: Matthias Zepper <MatthiasZepper@users.noreply.github.com>\r\nCo-authored-by: Vlad Savelyev <vladislav.sav@gmail.com>","shortMessageHtmlLink":"UMI-tools extract module: Improve plots (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2341050751\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2614\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2614/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2614\">#2614</a>)"}},{"before":"c60f6e03116ce46b9e4d50eeb23410b218842438","after":null,"ref":"refs/heads/naive-fix-block-iter-contents-re","pushedAt":"2024-06-05T22:22:45.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"7df388ab354897912de64a68947a8ebcbe1ab7e6","after":"1dcf6cf76935a0b7f16c5285d4876269eb8fe516","ref":"refs/heads/main","pushedAt":"2024-06-05T22:22:44.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix `re_contents` search patterns when pattern is in the middle of the file - naive (#2610)\n\n* Mark htseq too-generic pattern \"shared\" to avoid matching with other modules\r\n\r\n* Prepend picard re_contents sesarch patterns with .* to allow middle of string\r\n\r\n* Match each line in block separately\r\n\r\n* Stricter picard patterns to avoid false positive matches","shortMessageHtmlLink":"Fix <code>re_contents</code> search patterns when pattern is in the middle of th…"}},{"before":"aebafc60bc96387f15ef6967b7eb4adff9d8d3ec","after":"7df388ab354897912de64a68947a8ebcbe1ab7e6","ref":"refs/heads/main","pushedAt":"2024-06-05T22:21:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"fix disabling row sort in custom content (#2604)\n\n* fix disabling row sort\r\n\r\n* Use deprecated from ValiatedConfig instead of alias for TableConfig\r\n\r\n* Fix\r\n\r\n* Changelog line\r\n\r\n* Fix\r\n\r\n* Fix table header configs\r\n\r\n* Make TableColumn id field deprecated\r\n\r\n* Clean table rid without linting\r\n\r\n* Skip lint for duplicated column rids\r\n\r\n* Pre-clean rid from title to avoid linting erros\r\n\r\n* Clean general stats table column id as well\r\n\r\n---------\r\n\r\nCo-authored-by: Vlad Savelyev <vladislav.sav@gmail.com>","shortMessageHtmlLink":"fix disabling row sort in custom content (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2329431881\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2604\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2604/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2604\">#2604</a>)"}},{"before":"80fa00f7a6d5b33491a4c9066334e03592e62422","after":"c60f6e03116ce46b9e4d50eeb23410b218842438","ref":"refs/heads/naive-fix-block-iter-contents-re","pushedAt":"2024-06-05T22:14:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Stricter picard patterns to avoid false positive matches","shortMessageHtmlLink":"Stricter picard patterns to avoid false positive matches"}},{"before":null,"after":"80fa00f7a6d5b33491a4c9066334e03592e62422","ref":"refs/heads/naive-fix-block-iter-contents-re","pushedAt":"2024-06-05T21:38:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Match each line in block separately","shortMessageHtmlLink":"Match each line in block separately"}},{"before":"8f623c24eb7491ab3d3cbee303e4511ae28467f9","after":"a603a09954385192ee07d4ad9b17fcb0c3e30d87","ref":"refs/heads/fix-block-iter-contents-re","pushedAt":"2024-06-05T21:14:08.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Merge branch 'main' into fix-block-iter-contents-re","shortMessageHtmlLink":"Merge branch 'main' into fix-block-iter-contents-re"}},{"before":"38dd8f7526183d72c5c7ce4c79e5a1478ad92590","after":"aebafc60bc96387f15ef6967b7eb4adff9d8d3ec","ref":"refs/heads/main","pushedAt":"2024-06-05T21:13:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix smooth_points_sumcounts type","shortMessageHtmlLink":"Fix smooth_points_sumcounts type"}},{"before":null,"after":"8f623c24eb7491ab3d3cbee303e4511ae28467f9","ref":"refs/heads/fix-block-iter-contents-re","pushedAt":"2024-06-05T19:50:54.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Fix line block search pattterns with re_contents","shortMessageHtmlLink":"Fix line block search pattterns with re_contents"}},{"before":"11c58fabe4daf3f80dc4c841ea6b1c400f2ce0bc","after":"38dd8f7526183d72c5c7ce4c79e5a1478ad92590","ref":"refs/heads/main","pushedAt":"2024-06-03T18:37:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Small improvement to the line block iterator (#2588)\n\nCo-authored-by: Vlad Savelyev <vladislav.sav@gmail.com>","shortMessageHtmlLink":"Small improvement to the line block iterator (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2320229740\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2588\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2588/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2588\">#2588</a>)"}},{"before":"5c3a2508b5733f4514e19e727da4f17eadcebc76","after":null,"ref":"refs/heads/ewels/update-readme-logos","pushedAt":"2024-06-02T16:10:47.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"788e78beb890467c383c712295c4e86c16fc25e8","after":"11c58fabe4daf3f80dc4c841ea6b1c400f2ce0bc","ref":"refs/heads/main","pushedAt":"2024-06-02T16:10:47.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Update README logos for better compatibility (#2603)\n\n* Update README logos for better compatibility\r\n\r\n* Apply suggestions from code review","shortMessageHtmlLink":"Update README logos for better compatibility (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2328587473\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2603\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2603/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2603\">#2603</a>)"}},{"before":"9b2d7a9af1745bb57c8e0722933263f8e4dc00df","after":"5c3a2508b5733f4514e19e727da4f17eadcebc76","ref":"refs/heads/ewels/update-readme-logos","pushedAt":"2024-05-31T21:10:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Apply suggestions from code review","shortMessageHtmlLink":"Apply suggestions from code review"}},{"before":"788e78beb890467c383c712295c4e86c16fc25e8","after":"9b2d7a9af1745bb57c8e0722933263f8e4dc00df","ref":"refs/heads/ewels/update-readme-logos","pushedAt":"2024-05-31T21:07:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Update README logos for better compatibility","shortMessageHtmlLink":"Update README logos for better compatibility"}},{"before":null,"after":"788e78beb890467c383c712295c4e86c16fc25e8","ref":"refs/heads/ewels/update-readme-logos","pushedAt":"2024-05-31T21:07:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Set version to 1.23dev","shortMessageHtmlLink":"Set version to 1.23dev"}},{"before":"0e2a03526160253fa7ad72bd45ad814da1b73b8a","after":"788e78beb890467c383c712295c4e86c16fc25e8","ref":"refs/heads/main","pushedAt":"2024-05-31T18:31:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Set version to 1.23dev","shortMessageHtmlLink":"Set version to 1.23dev"}},{"before":"59f5032c6520214d663a047a9b1192e9396d2a1b","after":null,"ref":"refs/heads/rich-codex","pushedAt":"2024-05-31T18:26:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"b1625c0ff47ffb6932b27f8e47fcabf0ece58852","after":"0e2a03526160253fa7ad72bd45ad814da1b73b8a","ref":"refs/heads/main","pushedAt":"2024-05-31T18:26:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Rich codex v1.22.2 (#2602)\n\n* Generate new screengrabs with rich-codex\r\n\r\n* Rename image\r\n\r\n---------\r\n\r\nCo-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Rich codex v1.22.2 (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2328377229\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2602\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2602/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2602\">#2602</a>)"}},{"before":"7f4b09b6b549ea5e8b70a132f3b503226689c669","after":"59f5032c6520214d663a047a9b1192e9396d2a1b","ref":"refs/heads/rich-codex","pushedAt":"2024-05-31T18:26:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Rename image","shortMessageHtmlLink":"Rename image"}},{"before":"b1625c0ff47ffb6932b27f8e47fcabf0ece58852","after":"7f4b09b6b549ea5e8b70a132f3b503226689c669","ref":"refs/heads/rich-codex","pushedAt":"2024-05-31T18:25:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Generate new screengrabs with rich-codex","shortMessageHtmlLink":"Generate new screengrabs with rich-codex"}},{"before":"79f8a8cec32bffd8e9f542a9ab0d7edb00da29af","after":null,"ref":"refs/heads/remove-uv","pushedAt":"2024-05-31T18:25:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":"931216094f647c7564bbab0f171538b5c787e6a4","after":null,"ref":"refs/heads/rich-codex2","pushedAt":"2024-05-31T18:24:59.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"}},{"before":null,"after":"b1625c0ff47ffb6932b27f8e47fcabf0ece58852","ref":"refs/heads/rich-codex","pushedAt":"2024-05-31T18:24:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vladsavelyev","name":"Vlad Savelyev","path":"/vladsavelyev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1575412?s=80&v=4"},"commit":{"message":"Bump 1.22.2 (#2601)\n\n* Bump version 1.22.2\r\n\r\n* Add changelog","shortMessageHtmlLink":"Bump 1.22.2 (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2328361895\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MultiQC/MultiQC/issues/2601\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/MultiQC/MultiQC/pull/2601/hovercard\" href=\"https://github.com/MultiQC/MultiQC/pull/2601\">#2601</a>)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEYoxmswA","startCursor":null,"endCursor":null}},"title":"Activity · MultiQC/MultiQC"}