diff --git a/src/sparcstools/stitch.py b/src/sparcstools/stitch.py index b590193..5cab648 100644 --- a/src/sparcstools/stitch.py +++ b/src/sparcstools/stitch.py @@ -422,7 +422,7 @@ def _assemble_mosaic(mosaic, crop = crop): for i, channel in enumerate(slide.metadata.channel_map.values()): #save using tifffile library to ensure compatibility with very large tif files - imsave(os.path.join(outdir, slidename + "_"+channel+'_cropped.tif'), merged_array[i].astype('uint16')) + imsave(os.path.join(outdir, slidename + "_"+channel+'.tif'), merged_array[i].astype('uint16')) if export_XML: _write_xml(outdir, slide.metadata.channel_map.values(), slidename, cropped = False)