{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":181846371,"defaultBranch":"master","name":"nnUNet","ownerLogin":"MIC-DKFZ","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-04-17T08:10:56.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/31731892?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714036558.0","currentOid":""},"activityList":{"items":[{"before":"ed88855f5fa03142d989e90c5ae1588b89858d00","after":"2eaa371317c55e22bf5166428315076a1ba9b7af","ref":"refs/heads/master","pushedAt":"2024-06-21T12:11:07.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"nerge","shortMessageHtmlLink":"nerge"}},{"before":"ec229b53c206ecf79c786e4b838e3c511462c76e","after":"ed88855f5fa03142d989e90c5ae1588b89858d00","ref":"refs/heads/master","pushedAt":"2024-06-19T12:00:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"use np.allclose as suggested in #2282","shortMessageHtmlLink":"use np.allclose as suggested in <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2347257472\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2282\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2282/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2282\">#2282</a>"}},{"before":"e42b9edd351b3799d1b23c871969f4823753d561","after":"ec229b53c206ecf79c786e4b838e3c511462c76e","ref":"refs/heads/master","pushedAt":"2024-06-19T09:46:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"add trainers with 500 and 750 epochs","shortMessageHtmlLink":"add trainers with 500 and 750 epochs"}},{"before":"852b30312f800cde1eaa7f7f45e2b2252746dbae","after":"e42b9edd351b3799d1b23c871969f4823753d561","ref":"refs/heads/master","pushedAt":"2024-06-19T09:32:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix #2300; dataloader did not stack segmentations properly if deep supervision was disabled","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2300.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2359366826\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2300\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2300/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2300\">#2300</a>; dataloader did not stack segmentations properly if deep su…"}},{"before":"25124bfe50aa3dc93fb97d86072bdc632670780a","after":"852b30312f800cde1eaa7f7f45e2b2252746dbae","ref":"refs/heads/master","pushedAt":"2024-06-18T07:45:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'santhisenan/fix-#2292'","shortMessageHtmlLink":"Merge remote-tracking branch 'santhisenan/fix-#2292'"}},{"before":"23afd25d6c43f485314e1a7a6ba1d7b3546e4a0c","after":"25124bfe50aa3dc93fb97d86072bdc632670780a","ref":"refs/heads/master","pushedAt":"2024-06-17T08:33:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"add nnUNetTrainer_onlyMirror01_DASegOrd0","shortMessageHtmlLink":"add nnUNetTrainer_onlyMirror01_DASegOrd0"}},{"before":"8b6adc2be0c4ccc43657bab0bd944f4d4f22feb6","after":"23afd25d6c43f485314e1a7a6ba1d7b3546e4a0c","ref":"refs/heads/master","pushedAt":"2024-06-17T08:22:57.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"merge","shortMessageHtmlLink":"merge"}},{"before":"75c46fe7c1c85c60e020d76e387772c7be02a1af","after":"8b6adc2be0c4ccc43657bab0bd944f4d4f22feb6","ref":"refs/heads/master","pushedAt":"2024-06-17T06:40:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix bug with old plans and ResidualEncoderUNet","shortMessageHtmlLink":"fix bug with old plans and ResidualEncoderUNet"}},{"before":"9ffe0a50758281069311344ed963e42b88a65245","after":"75c46fe7c1c85c60e020d76e387772c7be02a1af","ref":"refs/heads/master","pushedAt":"2024-06-07T15:19:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"nnUNetPlanner_torchres","shortMessageHtmlLink":"nnUNetPlanner_torchres"}},{"before":"a7377539268f744881788aa15d7030f11da320fe","after":"9ffe0a50758281069311344ed963e42b88a65245","ref":"refs/heads/master","pushedAt":"2024-06-07T12:07:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"streamling parametrixation of aniso axis","shortMessageHtmlLink":"streamling parametrixation of aniso axis"}},{"before":"1cc001fcd2bc4810298c16b888ad12a0cbcb237e","after":"a7377539268f744881788aa15d7030f11da320fe","ref":"refs/heads/master","pushedAt":"2024-06-07T11:07:43.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"allow resampling with torch","shortMessageHtmlLink":"allow resampling with torch"}},{"before":"3b284d79bbf64ec13d893d46b0324edc7ac5034c","after":"1cc001fcd2bc4810298c16b888ad12a0cbcb237e","ref":"refs/heads/master","pushedAt":"2024-06-07T08:15:34.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'mzenk/fix_accumulate_cv'","shortMessageHtmlLink":"Merge remote-tracking branch 'mzenk/fix_accumulate_cv'"}},{"before":"4eb1f5d3181a5d95d39bd207cd932a3613b7dffe","after":"3b284d79bbf64ec13d893d46b0324edc7ac5034c","ref":"refs/heads/master","pushedAt":"2024-06-07T08:13:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'mzenk/fix_nibabelio_docs'","shortMessageHtmlLink":"Merge remote-tracking branch 'mzenk/fix_nibabelio_docs'"}},{"before":"8fd3580ab1770f12882a66699b93dee3e6455251","after":"4eb1f5d3181a5d95d39bd207cd932a3613b7dffe","ref":"refs/heads/master","pushedAt":"2024-06-05T13:17:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix a bug where the spacing would not be transposed in export","shortMessageHtmlLink":"fix a bug where the spacing would not be transposed in export"}},{"before":"769b80a370a05c7e39ca2811be502dced7e96496","after":"8fd3580ab1770f12882a66699b93dee3e6455251","ref":"refs/heads/master","pushedAt":"2024-06-04T07:58:15.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'ptlzon/patch-1'","shortMessageHtmlLink":"Merge remote-tracking branch 'ptlzon/patch-1'"}},{"before":"19ae215bc8fef6a95fdc166f9fc305558f2e3a74","after":"769b80a370a05c7e39ca2811be502dced7e96496","ref":"refs/heads/master","pushedAt":"2024-06-04T07:56:56.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"Merge branch 'master' of git.dkfz.de:mic/internal/nnu-net","shortMessageHtmlLink":"Merge branch 'master' of git.dkfz.de:mic/internal/nnu-net"}},{"before":"604d0fdc211c53a0a3a9f66f0cf87f78fd740f30","after":"19ae215bc8fef6a95fdc166f9fc305558f2e3a74","ref":"refs/heads/master","pushedAt":"2024-06-03T08:23:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"add train instructions","shortMessageHtmlLink":"add train instructions"}},{"before":"80f7c3df46b479d351a23492fcd7bc12551308fd","after":"604d0fdc211c53a0a3a9f66f0cf87f78fd740f30","ref":"refs/heads/master","pushedAt":"2024-06-03T08:15:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"use final checkpoint, we renamed the checkpoint in previous checkpoints","shortMessageHtmlLink":"use final checkpoint, we renamed the checkpoint in previous checkpoints"}},{"before":"0dd755ac5c31a9b0d690c14a9ed4d968c75a691d","after":"80f7c3df46b479d351a23492fcd7bc12551308fd","ref":"refs/heads/master","pushedAt":"2024-06-03T07:29:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"disable torch.compile for mps, give clearer error messages, fix #2244","shortMessageHtmlLink":"disable torch.compile for mps, give clearer error messages, <span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2244.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2323482193\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2244\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2244/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2244\">#2244</a>"}},{"before":"d12a0c1c02c18b23918fe3d0cf94f56086ef3e85","after":"0dd755ac5c31a9b0d690c14a9ed4d968c75a691d","ref":"refs/heads/master","pushedAt":"2024-06-03T05:30:47.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"NibabelIOWithReorient","shortMessageHtmlLink":"NibabelIOWithReorient"}},{"before":"5549ead840a84bbacb2ecf76c5fd95f34045c231","after":"d12a0c1c02c18b23918fe3d0cf94f56086ef3e85","ref":"refs/heads/master","pushedAt":"2024-05-28T07:46:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"disable torch.compile for windows #2219","shortMessageHtmlLink":"disable torch.compile for windows <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2314509484\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2219\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2219/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2219\">#2219</a>"}},{"before":"7141d4f13d4e178033eea98fa1261b2686fd93e2","after":"5549ead840a84bbacb2ecf76c5fd95f34045c231","ref":"refs/heads/master","pushedAt":"2024-05-28T07:40:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix #2219 by disabling torch.compile if the device is CPU","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2219.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2314509484\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2219\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2219/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2219\">#2219</a> by disabling torch.compile if the device is CPU"}},{"before":"086ae96730274ba324c85a4d63654d978bccd555","after":"7141d4f13d4e178033eea98fa1261b2686fd93e2","ref":"refs/heads/master","pushedAt":"2024-05-28T07:36:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix #2181; please install latest (master) batchgeneratorsv2","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2181.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2295377575\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2181\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2181/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2181\">#2181</a>; please install latest (master) batchgeneratorsv2"}},{"before":"e5972967a860d551a03ae598990b2252f0387c56","after":"086ae96730274ba324c85a4d63654d978bccd555","ref":"refs/heads/master","pushedAt":"2024-05-23T13:41:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"move self.on_train_end() into except","shortMessageHtmlLink":"move self.on_train_end() into except"}},{"before":"e0b33a6e96d6838b7d2dda4b27b0c4ef74339127","after":"e5972967a860d551a03ae598990b2252f0387c56","ref":"refs/heads/master","pushedAt":"2024-05-23T13:36:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix on_train_end not being executed in OOM cases","shortMessageHtmlLink":"fix on_train_end not being executed in OOM cases"}},{"before":"7372db87899c5dbeb3f04f8c7d1500c0897f2c23","after":"e0b33a6e96d6838b7d2dda4b27b0c4ef74339127","ref":"refs/heads/master","pushedAt":"2024-05-23T07:32:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"nnUNetTrainerBenchmark_5epochs now saves hostname as well","shortMessageHtmlLink":"nnUNetTrainerBenchmark_5epochs now saves hostname as well"}},{"before":"e539637821b67893bd57e4ba9dc1e60a218ae3ea","after":"7372db87899c5dbeb3f04f8c7d1500c0897f2c23","ref":"refs/heads/master","pushedAt":"2024-05-21T10:10:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix #2110","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2110.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2250089916\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2110\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2110/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2110\">#2110</a>"}},{"before":"7907981d841eed70639e407e8ed2b9095f011e38","after":"e539637821b67893bd57e4ba9dc1e60a218ae3ea","ref":"refs/heads/master","pushedAt":"2024-05-08T20:06:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"fix #2144","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #2144.\">fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2267018692\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2144\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2144/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2144\">#2144</a>"}},{"before":"2d2e8ce2c0261dc88b53866dcc4c71e6972432ed","after":"7907981d841eed70639e407e8ed2b9095f011e38","ref":"refs/heads/master","pushedAt":"2024-05-07T06:00:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"add .gipl as supported file format in SimpleITKIO #2066","shortMessageHtmlLink":"add .gipl as supported file format in SimpleITKIO <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2224777954\" data-permission-text=\"Title is private\" data-url=\"https://github.com/MIC-DKFZ/nnUNet/issues/2066\" data-hovercard-type=\"issue\" data-hovercard-url=\"/MIC-DKFZ/nnUNet/issues/2066/hovercard\" href=\"https://github.com/MIC-DKFZ/nnUNet/issues/2066\">#2066</a>"}},{"before":"433dd9ca2ca77f3197c3c3cb6c61e009007a4dc1","after":"2d2e8ce2c0261dc88b53866dcc4c71e6972432ed","ref":"refs/heads/master","pushedAt":"2024-05-05T10:29:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FabianIsensee","name":"Fabian Isensee","path":"/FabianIsensee","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11302164?s=80&v=4"},"commit":{"message":"final","shortMessageHtmlLink":"final"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEa43zlgA","startCursor":null,"endCursor":null}},"title":"Activity · MIC-DKFZ/nnUNet"}