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Boomer markdown output #266

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matentzn opened this issue Mar 11, 2022 · 2 comments
Open

Boomer markdown output #266

matentzn opened this issue Mar 11, 2022 · 2 comments

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@matentzn
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  • Boomer markdown output should not entirely obfuscate the IDs (labels with ID in brackets maybe?)
  • Combined posterior probability for each clique
  • Some confidence measure (multiplication of the probabilities with least next likely probability)
  • Some way to go quickly to the images from the markdown output
@balhoff
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balhoff commented Mar 11, 2022

Boomer markdown output should not entirely obfuscate the IDs (labels with ID in brackets maybe?)

@matentzn I think it already does this:

1,2-dichloroethane + H2O <=> 2-chloroethanol + chloride + H(+) 1,2-dichloroethane + H2O = 2-chloroethanol + chloride + H(+) 1,2-dichloroethane + H2O => 2-chloroethanol + chloride + H(+) 1-haloalkane + H2O <=> a halide anion + a primary alcohol + H(+) 1-haloalkane + H2O = a halide anion + a primary alcohol + H(+) 1-haloalkane + H2O => a halide anion + a primary alcohol + H(+) 2-chloroethanol + chloride + H(+) => 1,2-dichloroethane + H2O EC:3.8.1.5 METACYC:DHLAXANAU-RXN METACYC:HALOALKANE-DEHALOGENASE-RXN a halide anion + a primary alcohol + H(+) => 1-haloalkane + H2O haloalkane dehalogenase activity

@matentzn
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But what is the ID of "haloalkane dehalgonase activity"?
image

As this is for humans, we need to see really quickly not just the label, but also the ID without having to hover I think..

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