Positions in the result are 0-based? #75
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ploy-np
loganylchen
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Hi there, May I ask if the position in the final result was 0-based? Best, |
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Answered by
ploy-np
Aug 13, 2021
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Hi @btrspg, |
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ploy-np
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Hi @ploy-np , If I run xpore on transcriptomic mode, does it consider 0-based annotation? I guess that from the middle position in the Kmer column ... Thanks! |
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Hi @btrspg,
The final result table reported in xpore.readthedocs.io and our paper is genomic one-based coordinates. However, when you run xpore, the results will depend on what kind of index system used in the annotation file (gtf) you provide.