{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":481189531,"defaultBranch":"main","name":"read2tree","ownerLogin":"DessimozLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-04-13T11:32:07.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/16049503?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1711789650.0","currentOid":""},"activityList":{"items":[{"before":"aa5bb441847b3088ad669f48347e465d37da4559","after":"5765deb32cc3dcd9f6d3d38d0419ca24416dff9e","ref":"refs/heads/minimap2","pushedAt":"2024-05-08T00:57:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"7e575826e194eef180a9d67bfc953c5b73cbb6bd","after":"aa5bb441847b3088ad669f48347e465d37da4559","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T23:12:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"7402d0316de7cb00137af0ea2708ea34463730d1","after":"7e575826e194eef180a9d67bfc953c5b73cbb6bd","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T23:11:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"ad1ef0e5eed9c925aac13f2e4b4ebac94241f9d2","after":"7402d0316de7cb00137af0ea2708ea34463730d1","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T23:10:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"c4823c82fd3982dffed0366344ece5e8375fefc4","after":"ad1ef0e5eed9c925aac13f2e4b4ebac94241f9d2","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T23:05:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":" debug","shortMessageHtmlLink":" debug"}},{"before":"1e21c40762ddada63c0047e78cdc1a3df939f412","after":"c4823c82fd3982dffed0366344ece5e8375fefc4","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T16:57:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":" debug","shortMessageHtmlLink":" debug"}},{"before":"edd50a2a4fec5bcfab47b6dacc2a5742188e797f","after":"1e21c40762ddada63c0047e78cdc1a3df939f412","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T16:49:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] debug","shortMessageHtmlLink":"[WIP] debug"}},{"before":"174d04668f84b7de69aa6b7b18ac4f9deda598c9","after":"edd50a2a4fec5bcfab47b6dacc2a5742188e797f","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T15:53:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] remove progress, define steps","shortMessageHtmlLink":"[WIP] remove progress, define steps"}},{"before":"bc3cd2ad48dc831ec39fd0d12099bf0a9f5fb67d","after":"174d04668f84b7de69aa6b7b18ac4f9deda598c9","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T14:33:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"remove progress, define steps","shortMessageHtmlLink":"remove progress, define steps"}},{"before":"fcdc8e3afb2eeb86a1d55ace004e8635bda4ac93","after":"bc3cd2ad48dc831ec39fd0d12099bf0a9f5fb67d","ref":"refs/heads/minimap2","pushedAt":"2024-05-07T14:31:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"4b9fd4e36ffc054e1cf8387218c9feb806db86c5","after":"fcdc8e3afb2eeb86a1d55ace004e8635bda4ac93","ref":"refs/heads/minimap2","pushedAt":"2024-04-29T18:29:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"fix a bug multi-sample","shortMessageHtmlLink":"fix a bug multi-sample"}},{"before":"503728fa0cc80d347fd83b34915813a48ee091a0","after":"4b9fd4e36ffc054e1cf8387218c9feb806db86c5","ref":"refs/heads/minimap2","pushedAt":"2024-04-17T18:30:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"fix a bug for paired end reads","shortMessageHtmlLink":"fix a bug for paired end reads"}},{"before":"e9fd497f2d5e1a00d7d480632e5f42b4922c296e","after":"92a7a8f612245c6aba87599058c20801ceffcd96","ref":"refs/heads/main","pushedAt":"2024-03-31T12:57:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"improve logging","shortMessageHtmlLink":"improve logging"}},{"before":"ec5f4c42aa71d65f78321ee133b3b0574bc2971e","after":"e9fd497f2d5e1a00d7d480632e5f42b4922c296e","ref":"refs/heads/main","pushedAt":"2024-03-31T12:50:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"print r2t version & enable logger","shortMessageHtmlLink":"print r2t version & enable logger"}},{"before":"b0120c43c90dea41d36867cc0256487aa6db59b9","after":"503728fa0cc80d347fd83b34915813a48ee091a0","ref":"refs/heads/minimap2","pushedAt":"2024-03-31T12:48:07.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"enable logger","shortMessageHtmlLink":"enable logger"}},{"before":"56da6343af1faee8d9919d412fbe57b349d86b38","after":"ec5f4c42aa71d65f78321ee133b3b0574bc2971e","ref":"refs/heads/main","pushedAt":"2024-03-31T12:30:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"95b4776ce34a950ca79a1bc507ad35c8989c008d","after":"b0120c43c90dea41d36867cc0256487aa6db59b9","ref":"refs/heads/minimap2","pushedAt":"2024-03-31T10:36:43.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"add todo","shortMessageHtmlLink":"add todo"}},{"before":"d588782ffbeb553dae8d5cc4fa2d55388fb824af","after":"95b4776ce34a950ca79a1bc507ad35c8989c008d","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T16:39:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] no need to limit memory","shortMessageHtmlLink":"[WIP] no need to limit memory"}},{"before":"f602ca06baafeacce2a0896802b039e93b52433e","after":"d588782ffbeb553dae8d5cc4fa2d55388fb824af","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T16:36:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] fix threads, improve logging","shortMessageHtmlLink":"[WIP] fix threads, improve logging"}},{"before":"d7168e2c34607f008c8d563900ac5bffcd3ce38a","after":"56da6343af1faee8d9919d412fbe57b349d86b38","ref":"refs/heads/main","pushedAt":"2024-03-30T16:35:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"improve logging Mapper.py","shortMessageHtmlLink":"improve logging Mapper.py"}},{"before":"aeabe5296d4b9c115c9ad243e41b01eb4d575ed7","after":"f602ca06baafeacce2a0896802b039e93b52433e","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T15:58:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] cleanup","shortMessageHtmlLink":"[WIP] cleanup"}},{"before":"385ef09ff34d4e573c25e497150267c487f75ca0","after":"aeabe5296d4b9c115c9ad243e41b01eb4d575ed7","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T15:56:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] update minimap2 options","shortMessageHtmlLink":"[WIP] update minimap2 options"}},{"before":"60591a4ccd169a974748c09ccfcd7f69625edb13","after":"385ef09ff34d4e573c25e497150267c487f75ca0","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T15:52:16.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"add pass","shortMessageHtmlLink":"add pass"}},{"before":"2ddbd293d533054f8910b3f63172819259548655","after":"60591a4ccd169a974748c09ccfcd7f69625edb13","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T13:22:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] fix","shortMessageHtmlLink":"[WIP] fix"}},{"before":"3ea3b003267cd2b0f8f64a8cf0ac988fa5104f76","after":"2ddbd293d533054f8910b3f63172819259548655","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T12:57:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"[WIP] minimap2 & no temp file","shortMessageHtmlLink":"[WIP] minimap2 & no temp file"}},{"before":"d7168e2c34607f008c8d563900ac5bffcd3ce38a","after":"3ea3b003267cd2b0f8f64a8cf0ac988fa5104f76","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T09:08:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"update version","shortMessageHtmlLink":"update version"}},{"before":null,"after":"d7168e2c34607f008c8d563900ac5bffcd3ce38a","ref":"refs/heads/minimap2","pushedAt":"2024-03-30T09:07:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"Update clean_fasta_cdna_cds.py\n\nfix - NCBI prots might not have _prot_ in record","shortMessageHtmlLink":"Update clean_fasta_cdna_cds.py"}},{"before":"167c12a1c7e7613f78193f20567f8e193edde2ac","after":"d7168e2c34607f008c8d563900ac5bffcd3ce38a","ref":"refs/heads/main","pushedAt":"2024-03-05T22:24:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"Update clean_fasta_cdna_cds.py\n\nfix - NCBI prots might not have _prot_ in record","shortMessageHtmlLink":"Update clean_fasta_cdna_cds.py"}},{"before":"a0be96d4f50bdda6ec33d834303b514d1f74fb79","after":"167c12a1c7e7613f78193f20567f8e193edde2ac","ref":"refs/heads/main","pushedAt":"2024-02-02T15:10:20.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"implement issue #55\n\nadd output file that contains the boundaries of genes in the concatenated MSA.","shortMessageHtmlLink":"implement issue #55"}},{"before":"ed6d7ebebfdceb9700491f4eb16396a131c083e1","after":"a0be96d4f50bdda6ec33d834303b514d1f74fb79","ref":"refs/heads/main","pushedAt":"2024-02-02T09:02:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"implement issue #55\n\nadd output file that contains the boundaries of genes in the concatenated MSA.","shortMessageHtmlLink":"implement issue #55"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAERB8F6gA","startCursor":null,"endCursor":null}},"title":"Activity ยท DessimozLab/read2tree"}