{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":515201322,"defaultBranch":"main","name":"FastOMA","ownerLogin":"DessimozLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-07-18T13:42:51.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/16049503?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718980317.0","currentOid":""},"activityList":{"items":[{"before":"46044375ddfeba3b14758418ac37acdc761a4f1b","after":"c6ad4058f11e2805fdbb2de6c64cf86b2a7ebf07","ref":"refs/heads/dev","pushedAt":"2024-06-21T14:52:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"use much longer createTimeout for conda environment","shortMessageHtmlLink":"use much longer createTimeout for conda environment"}},{"before":null,"after":"d9ae7970c57aa3be2c6ab1705cac40620a36dbe5","ref":"refs/heads/mamba","pushedAt":"2024-06-21T14:31:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"enable mamba for installation","shortMessageHtmlLink":"enable mamba for installation"}},{"before":"1328226803e18464f2dfabb77bf75853edf43c2e","after":"46044375ddfeba3b14758418ac37acdc761a4f1b","ref":"refs/heads/dev","pushedAt":"2024-06-21T14:10:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"dev branch should use latest dev container","shortMessageHtmlLink":"dev branch should use latest dev container"}},{"before":"25d330b1fb288a58be2cc0437d6fc143ddb4ff34","after":"1328226803e18464f2dfabb77bf75853edf43c2e","ref":"refs/heads/dev","pushedAt":"2024-06-21T14:04:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"default input_folder param including for remote compat","shortMessageHtmlLink":"default input_folder param including for remote compat"}},{"before":"9b62e62e0043120bafe25ba658378c053f19500d","after":"25d330b1fb288a58be2cc0437d6fc143ddb4ff34","ref":"refs/heads/dev","pushedAt":"2024-06-21T13:31:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"fix path of conda environment","shortMessageHtmlLink":"fix path of conda environment"}},{"before":"a76646c5e117afd0770e566eec125bc442cc3033","after":"bbcc10d011684f169c4feb5401334c07e6504c23","ref":"refs/heads/main","pushedAt":"2024-06-21T12:57:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1328bc75eab2335f03b290c854dad338967d67ab","after":"9b62e62e0043120bafe25ba658378c053f19500d","ref":"refs/heads/dev","pushedAt":"2024-06-20T11:37:25.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"prepare feature branch","shortMessageHtmlLink":"prepare feature branch"}},{"before":"5d9d0f47a527a64569df70d4320742d25174124f","after":"a76646c5e117afd0770e566eec125bc442cc3033","ref":"refs/heads/main","pushedAt":"2024-06-20T11:35:37.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"bump version 0.3.0 -> 0.3.1","shortMessageHtmlLink":"bump version 0.3.0 -> 0.3.1"}},{"before":"bf17a1594bcec3dd415701e40640c4fe448cbd21","after":"1328bc75eab2335f03b290c854dad338967d67ab","ref":"refs/heads/dev","pushedAt":"2024-06-20T11:01:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"notebook template linked instead of assuming local checkout","shortMessageHtmlLink":"notebook template linked instead of assuming local checkout"}},{"before":"512b43435d2c9c9b5c26684b874d7eb9b7f35628","after":"bf17a1594bcec3dd415701e40640c4fe448cbd21","ref":"refs/heads/dev","pushedAt":"2024-06-20T08:53:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[FIX] build biopython in arm64 container again","shortMessageHtmlLink":"[FIX] build biopython in arm64 container again"}},{"before":"4b9fbc0a4b6a57104f5d763926b0382b3f05e388","after":"512b43435d2c9c9b5c26684b874d7eb9b7f35628","ref":"refs/heads/dev","pushedAt":"2024-06-20T07:36:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"biopython now requires wheel to build wheel","shortMessageHtmlLink":"biopython now requires wheel to build wheel"}},{"before":"d0b412fabae99a21911a11160269b22a5857b656","after":"4b9fbc0a4b6a57104f5d763926b0382b3f05e388","ref":"refs/heads/dev","pushedAt":"2024-06-20T06:51:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[FIX] broken numpy/pytables combination for omamer. https://github.com/PyTables/PyTables/issues/1172","shortMessageHtmlLink":"[FIX] broken numpy/pytables combination for omamer. PyTables/PyTables…"}},{"before":"5505162dce3299006328fbce9921026880b211ad","after":"5d9d0f47a527a64569df70d4320742d25174124f","ref":"refs/heads/main","pushedAt":"2024-06-19T23:56:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sinamajidian","name":"Sina Majidian","path":"/sinamajidian","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41860044?s=80&v=4"},"commit":{"message":"clarifying installation, adding info on singularity/docker","shortMessageHtmlLink":"clarifying installation, adding info on singularity/docker"}},{"before":null,"after":"d0b412fabae99a21911a11160269b22a5857b656","ref":"refs/heads/dev","pushedAt":"2024-06-19T08:53:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"complet manifest section and start with dev/main branch system","shortMessageHtmlLink":"complet manifest section and start with dev/main branch system"}},{"before":"3e0f111f417359b8a1d1ff79d67479e9b377dcbe","after":"5505162dce3299006328fbce9921026880b211ad","ref":"refs/heads/main","pushedAt":"2024-06-19T06:32:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"fix broken report after merge of feature branch","shortMessageHtmlLink":"fix broken report after merge of feature branch"}},{"before":"e3f1f7119ad1c386292b001b01f5814ca47cc6ac","after":"3e0f111f417359b8a1d1ff79d67479e9b377dcbe","ref":"refs/heads/main","pushedAt":"2024-06-18T12:44:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"bump version v0.2.2 -> v0.3.0","shortMessageHtmlLink":"bump version v0.2.2 -> v0.3.0"}},{"before":"09c6f3f7354097e8d27bbb97f2595f244fa8a3bc","after":null,"ref":"refs/heads/no_configpy","pushedAt":"2024-06-18T12:39:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"}},{"before":"25f61b24883bdfff098952f6f28b5a38317874e6","after":null,"ref":"refs/heads/dependabot/github_actions/docker/build-push-action-6","pushedAt":"2024-06-18T12:38:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"}},{"before":"0c7144488ee17f9286780ca1abe4aef882ca3b6a","after":"e3f1f7119ad1c386292b001b01f5814ca47cc6ac","ref":"refs/heads/main","pushedAt":"2024-06-18T12:38:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"Bump docker/build-push-action from 5 to 6\n\nBumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.\n- [Release notes](https://github.com/docker/build-push-action/releases)\n- [Commits](https://github.com/docker/build-push-action/compare/v5...v6)\n\n---\nupdated-dependencies:\n- dependency-name: docker/build-push-action\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump docker/build-push-action from 5 to 6"}},{"before":"70088c83a9a4879b1057de54f4ea90b485143c04","after":null,"ref":"refs/heads/dependabot/github_actions/pypa/gh-action-pypi-publish-1.9.0","pushedAt":"2024-06-18T12:38:12.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"}},{"before":"8a883a6083051f3ee0fe23dee0d29d0ecdd0bda5","after":"0c7144488ee17f9286780ca1abe4aef882ca3b6a","ref":"refs/heads/main","pushedAt":"2024-06-18T12:38:10.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0\n\nBumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.14 to 1.9.0.\n- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)\n- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/81e9d935c883d0b210363ab89cf05f3894778450...ec4db0b4ddc65acdf4bff5fa45ac92d78b56bdf0)\n\n---\nupdated-dependencies:\n- dependency-name: pypa/gh-action-pypi-publish\n dependency-type: direct:production\n update-type: version-update:semver-minor\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0"}},{"before":"4c4fc9d0aac23536f792c28691984eebd2f7a843","after":"8a883a6083051f3ee0fe23dee0d29d0ecdd0bda5","ref":"refs/heads/main","pushedAt":"2024-06-18T12:37:27.000Z","pushType":"push","commitsCount":45,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"Merge branch 'better-representative'","shortMessageHtmlLink":"Merge branch 'better-representative'"}},{"before":"e9133696de7caedd770ac8da6c57c9527760fb1b","after":"47c99dc19e0c6933b56953e601e4434a6e8665e7","ref":"refs/heads/better-representative","pushedAt":"2024-06-18T12:25:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"plot prot dist only for small dataset- temp solution","shortMessageHtmlLink":"plot prot dist only for small dataset- temp solution"}},{"before":null,"after":"25f61b24883bdfff098952f6f28b5a38317874e6","ref":"refs/heads/dependabot/github_actions/docker/build-push-action-6","pushedAt":"2024-06-18T01:23:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump docker/build-push-action from 5 to 6\n\nBumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.\n- [Release notes](https://github.com/docker/build-push-action/releases)\n- [Commits](https://github.com/docker/build-push-action/compare/v5...v6)\n\n---\nupdated-dependencies:\n- dependency-name: docker/build-push-action\n dependency-type: direct:production\n update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump docker/build-push-action from 5 to 6"}},{"before":null,"after":"70088c83a9a4879b1057de54f4ea90b485143c04","ref":"refs/heads/dependabot/github_actions/pypa/gh-action-pypi-publish-1.9.0","pushedAt":"2024-06-17T02:03:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0\n\nBumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.14 to 1.9.0.\n- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)\n- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/81e9d935c883d0b210363ab89cf05f3894778450...ec4db0b4ddc65acdf4bff5fa45ac92d78b56bdf0)\n\n---\nupdated-dependencies:\n- dependency-name: pypa/gh-action-pypi-publish\n dependency-type: direct:production\n update-type: version-update:semver-minor\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0"}},{"before":"89bff67adbdc1ef9d73a25abad18cee0798311d4","after":"e9133696de7caedd770ac8da6c57c9527760fb1b","ref":"refs/heads/better-representative","pushedAt":"2024-06-11T15:07:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[ADD] copy tsv and tsv.gz files to genetree folder.","shortMessageHtmlLink":"[ADD] copy tsv and tsv.gz files to genetree folder."}},{"before":"50eb76fd6fa5e2f32092b3850f5b9509c582c435","after":"89bff67adbdc1ef9d73a25abad18cee0798311d4","ref":"refs/heads/better-representative","pushedAt":"2024-06-11T14:59:29.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[ADD] expose nr_repr_per_hog and filter_method as nextflow parameters","shortMessageHtmlLink":"[ADD] expose nr_repr_per_hog and filter_method as nextflow parameters"}},{"before":"7d199c518577d0685e3b66d32170ed3c7d61e1b1","after":"50eb76fd6fa5e2f32092b3850f5b9509c582c435","ref":"refs/heads/better-representative","pushedAt":"2024-06-11T14:39:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[ADD] expose nr_repr_per_hog and filter_method as nextflow parameters","shortMessageHtmlLink":"[ADD] expose nr_repr_per_hog and filter_method as nextflow parameters"}},{"before":"9d42fd5e9e119e811b6770bf534ac29cfbf9a774","after":"7d199c518577d0685e3b66d32170ed3c7d61e1b1","ref":"refs/heads/better-representative","pushedAt":"2024-06-11T12:59:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"store mapping representative -> members","shortMessageHtmlLink":"store mapping representative -> members"}},{"before":"2934e458c23c542c6454223a20d7c204de02583a","after":"9d42fd5e9e119e811b6770bf534ac29cfbf9a774","ref":"refs/heads/better-representative","pushedAt":"2024-05-29T09:35:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alpae","name":"Adrian Altenhoff","path":"/alpae","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1444726?s=80&v=4"},"commit":{"message":"[WIP] deactivated regrafting for low support case.","shortMessageHtmlLink":"[WIP] deactivated regrafting for low support case."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEa7QodgA","startCursor":null,"endCursor":null}},"title":"Activity · DessimozLab/FastOMA"}