analysis_manifest.md

Analysis Manifest

• This is the 'sample sheet' required to run daylily. An example can be found that will run the included test data here.
• Another example which runs the 7 GIAB google-brain 30x dataset can be found here. NOTE- the full giab dataset should only be run via the slurm profile.
• Copy this to a file named analysis_manifest.csv in the config top level directory, and it will be picked up when running dy-r.
• Optional column headers allow for sub sampling the input fastqs, as well as setting the -k bwa flag.
• If specified, truth VCF and BED files will be auto-detected and create concordance analysis reports.