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analysis_manifest.md

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Analysis Manifest

  • This is the 'sample sheet' required to run daylily. An example can be found that will run the included test data here.
  • Another example which runs the 7 GIAB google-brain 30x dataset can be found here. NOTE- the full giab dataset should only be run via the slurm profile.
  • Copy this to a file named analysis_manifest.csv in the config top level directory, and it will be picked up when running dy-r.
  • Optional column headers allow for sub sampling the input fastqs, as well as setting the -k bwa flag.
  • If specified, truth VCF and BED files will be auto-detected and create concordance analysis reports.