SEraster

[GohtaAihara]

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• Repository: https://github.com/JEFworks-Lab/SEraster

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[bioc-issue-bot]

Hi @GohtaAihara

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: SEraster
Type: Package
Title: Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis
Version: 0.99.0
Authors@R: 
    c(person("Gohta", "Aihara", email = "[email protected]", 
    role = c("aut", "cre"), 
    comment = c(ORCID = "0000-0002-2492-9610")), 
    person("Mayling", "Chen", email = "[email protected]",
    role = c("aut"),
    comment = c(ORCID = "0009-0009-0961-6665")),
    person("Lyla", "Atta", email = "[email protected]", 
    role = c("aut"), 
    comment = c(ORCID = "0000-0002-6113-0082")), 
    person("Jean", "Fan", email = "[email protected]", 
    role = c("aut", "rev"), 
    comment = c(ORCID = "0000-0002-0212-5451")))
URL: https://github.com/JEFworks-Lab/SEraster
BugReports: https://github.com/JEFworks-Lab/SEraster/issues
Description: SEraster is a rasterization preprocessing framework that aggregates  
    cellular information into spatial pixels to reduce resource requirements for  
    spatial omics data analysis. SEraster reduces the number of spatial points in  
    spatial omics datasets for downstream analysis through a process of rasterization  
    where single cells’ gene expression or cell-type labels are aggregated into  
    equally sized pixels based on a user-defined resolution. SEraster is built on  
    an R/Bioconductor S4 class called SpatialExperiment. SEraster can be incorporated  
    with other packages to conduct downstream analyses for spatial omics datasets,  
    such as detecting spatially variable genes.
biocViews: 
    Software,
    Spatial,
    GeneExpression,
    Transcriptomics,
    SingleCell,
    Preprocessing
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
Suggests: 
    CooccurrenceAffinity,
    nnSVG,
    testthat (>= 3.0.0),    
    knitr,
    rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
RoxygenNote: 7.3.1
Depends: 
    R (>= 4.3.0)
Imports: 
    BiocParallel,
    ggplot2,
    Matrix,
    methods,
    rearrr,
    sf,
    SpatialExperiment,
    SummarizedExperiment

[bioc-issue-bot]

Your package has been added to git.bioconductor.org to continue the
pre-review process. A build report will be posted shortly. Please
fix any ERROR and WARNING in the build report before a reviewer is
assigned or provide a justification on why you feel the ERROR or
WARNING should be granted an exception.

IMPORTANT: Please read this documentation for setting
up remotes to push to git.bioconductor.org. All changes should be
pushed to git.bioconductor.org moving forward. It is required to push a
version bump to git.bioconductor.org to trigger a new build report.

Bioconductor utilized your github ssh-keys for git.bioconductor.org
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[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "ERROR".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 22.04.3 LTS): SEraster_0.99.0.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SEraster to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

[GohtaAihara]

Hello,

According to the build report, the only error that my package encountered seems to be the bioc-devel mailing list subscription. I have now subscribed to the bioc-devel mailing list, and there is no changes to my package. That being said, could you please trigger a new build on your end? Or, could you please let me know how to trigger a new build without making any change?

Thank you in advance for your help.

Sincerely,

Gohta Aihara

[PeteHaitch]

@GohtaAihara It is required to push a
version bump to git.bioconductor.org to trigger a new build report.
So increase the version number from e.g., 0.99.0 to 0.99.1 in the DESCRIPTION and then commit and push that change to git.bioconductor.org

[bioc-issue-bot]

Received a valid push on git.bioconductor.org; starting a build for commit id: e50cc79995f17dd86728180ec12ebb056aaa0ee9

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 22.04.3 LTS): SEraster_0.99.1.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SEraster to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

[bioc-issue-bot]

A reviewer has been assigned to your package for an indepth review.
Please respond accordingly to any further comments from the reviewer.