NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(apply,antsImage)
S3method(apply,default)
S3method(as.array,antsImage)
S3method(as.character,antsImage)
S3method(as.data.frame,antsMatrix)
S3method(as.factor,antsImage)
S3method(as.matrix,antsImage)
S3method(boxplot,antsImage)
S3method(cut,antsImage)
S3method(density,antsImage)
S3method(factor,antsImage)
S3method(hist,antsImage)
S3method(mean,antsImage)
S3method(median,antsImage)
S3method(plot,antsImage)
S3method(quantile,antsImage)
S3method(sd,antsImage)
S3method(sd,default)
S3method(subset,antsImage)
S3method(unique,antsImage)
S3method(var,antsImage)
S3method(var,default)
export("%>%")
export("components<-")
export("direction<-")
export("origin<-")
export("pixeltype<-")
export("spacing<-")
export(.motion_correction)
export(abpBrainExtraction)
export(abpN4)
export(addNoiseToImage)
export(affineInitializer)
export(alffmap)
export(all)
export(ants.set.seed)
export(antsApplyTransforms)
export(antsApplyTransformsToPoints)
export(antsAverageImages)
export(antsBOLDNetworkAnalysis)
export(antsCompileFlags)
export(antsCopyImageInfo)
export(antsCopyImageInfo2)
export(antsDir)
export(antsGetDirection)
export(antsGetOrigin)
export(antsGetSpacing)
export(antsImageClone)
export(antsImageHeaderInfo)
export(antsImageIterator)
export(antsImageIteratorGet)
export(antsImageIteratorGetIndex)
export(antsImageIteratorGoToBegin)
export(antsImageIteratorGoToReverseBegin)
export(antsImageIteratorIsAtEnd)
export(antsImageIteratorIsAtReverseEnd)
export(antsImageIteratorNext)
export(antsImageIteratorPrevious)
export(antsImageIteratorRemaining)
export(antsImageIteratorSet)
export(antsImageIteratorSetIndex)
export(antsImageMutualInformation)
export(antsImagePhysicalSpaceConsistency)
export(antsImageRead)
export(antsImageTypeCast)
export(antsImageWrite)
export(antsIncludes)
export(antsLibs)
export(antsMotionCalculation)
export(antsMotionCorr)
export(antsRegistration)
export(antsSetDirection)
export(antsSetOrigin)
export(antsSetPixels)
export(antsSetSpacing)
export(antsSpatialICAfMRI)
export(antsTransformIndexToPhysicalPoint)
export(antsTransformPhysicalPointToIndex)
export(antsrGetPointerName)
export(antsrMetricCreate)
export(antsrMetricGetDerivative)
export(antsrMetricGetValue)
export(antsrMetricInitialize)
export(antsrMetricSetFixedImage)
export(antsrMetricSetFixedImageMask)
export(antsrMetricSetFixedTransform)
export(antsrMetricSetMovingImage)
export(antsrMetricSetMovingImageMask)
export(antsrMetricSetMovingTransform)
export(antsrMetricSetNumberOfHistogramBins)
export(antsrMetricSetRadius)
export(antsrMetricSetSampling)
export(antsrMotionCalculation)
export(antsrSurf)
export(antsrTransformFromDisplacementField)
export(antsrVol)
export(antsrimpute)
export(any)
export(apply)
export(applyAntsrTransform)
export(applyAntsrTransformToImage)
export(applyAntsrTransformToPoint)
export(applyAntsrTransformToVector)
export(as.antsImage)
export(as.antsMatrix)
export(aslAveraging)
export(aslCensoring)
export(aslDenoiseR)
export(aslPerfusion)
export(atropos)
export(basicInPaint)
export(bayesianCBF)
export(bayesianlm)
export(bigLMStats)
export(blockStimulus)
export(bloodPerfusionSVD)
export(buildTemplate)
export(check_ants)
export(clusterTimeSeries)
export(coerce_mask)
export(combineNuisancePredictors)
export(compcor)
export(components)
export(composeAntsrTransforms)
export(composeDisplacementFields)
export(composeTransformsToField)
export(computeDVARS)
export(computeDVARSspatialMap)
export(convolveImage)
export(corw)
export(createAntsrTransform)
export(createJacobianDeterminantImage)
export(createWarpedGrid)
export(cropImage)
export(cropIndices)
export(crossvalidatedR2)
export(cvEigenanatomy)
export(deconvolutionSVD)
export(decropImage)
export(denoiseImage)
export(direction)
export(displacementFieldFromAntsrTransform)
export(eanatDef)
export(eanatSelect)
export(eigSeg)
export(error_not_antsImage)
export(estSmooth)
export(euler)
export(exemplarInpainting)
export(extractSlice)
export(fMRINormalization)
export(fastMarchingExtension)
export(filterfMRIforNetworkAnalysis)
export(fitBsplineDisplacementField)
export(fitBsplineObjectToScatteredData)
export(fitThinPlateSplineDisplacementField)
export(fitTimeVaryingTransformToPointSets)
export(fitTransformToPairedPoints)
export(frequencyFilterfMRI)
export(fsl2antsrTransform)
export(functionalLungSegmentation)
export(fuzzySpatialCMeansSegmentation)
export(generateAifMaskImage)
export(geoSeg)
export(getANTsRData)
export(getASLNoisePredictors)
export(getAntsrTransformFixedParameters)
export(getAntsrTransformParameters)
export(getAverageOfTimeSeries)
export(getCenterOfMass)
export(getCentroids)
export(getMask)
export(getMultiResFeatureMatrix)
export(getMultivariateTemplateCoordinates)
export(getNeighborhoodAtVoxel)
export(getNeighborhoodInMask)
export(getPixels)
export(getTemplateCoordinates)
export(getfMRInuisanceVariables)
export(hausdorffDistance)
export(hemodynamicRF)
export(histogramEqualizeImage)
export(histogramMatchImage)
export(histogramMatchImage2)
export(iBind)
export(iMath)
export(icawhiten)
export(ilr)
export(ilr.predict)
export(image2ClusterImages)
export(imageDomainToSpatialMatrix)
export(imageFileNames2ImageList)
export(imageListToMatrix)
export(imageSimilarity)
export(imagesToMatrix)
export(initializeEigenanatomy)
export(initializeSimlr)
export(integrateVectorField)
export(integrateVelocityField)
export(interleaveMatrixWithItself)
export(invertAntsrTransform)
export(invertDisplacementField)
export(is.antsImage)
export(jlfProp)
export(joinEigenanatomy)
export(jointLabelFusion)
export(jointSmoothMatrixReconstruction)
export(kellyKapowski)
export(kmeansSegmentation)
export(knnSmoothImage)
export(knnSmoothingMatrix)
export(labelClusters)
export(labelGeometryMeasures)
export(labelImageCentroids)
export(labelOverlapMeasures)
export(labelStats)
export(labels2matrix)
export(lappend)
export(load.ANTsR)
export(localGyrificationIndex)
export(localJointLabelFusion)
export(lowrankRowMatrix)
export(make3ViewPNG)
export(makeGraph)
export(makeImage)
export(makePointsImage)
export(makePowersPointsImage)
export(maskImage)
export(mask_values)
export(matrix2timeseries)
export(matrixToImages)
export(max)
export(mergeChannels)
export(mergeListToNDImage)
export(mild)
export(milr)
export(milr.predict)
export(min)
export(mni2tal)
export(morphology)
export(mrvnrfs)
export(mrvnrfs.predict)
export(multiLabelMorphology)
export(multiResRandomForestRegression)
export(multichannelPCA)
export(multichannelToVector)
export(multiscaleSVD)
export(n3BiasFieldCorrection)
export(n3BiasFieldCorrection2)
export(n4BiasFieldCorrection)
export(networkEiganat)
export(origin)
export(orthogonalizeAndQSparsify)
export(pairwiseImageDistanceMatrix)
export(partialVolumeCorrection)
export(perfusionregression)
export(petSUVR)
export(pixeltype)
export(plotBasicNetwork)
export(plotPrettyGraph)
export(predictSimlr)
export(preprocessRestingBOLD)
export(preprocessfMRI)
export(priorBasedSegmentation)
export(prod)
export(quantifyCBF)
export(quantifySNPs)
export(randcca)
export(randomMask)
export(randsvd)
export(randwhiten)
export(range)
export(rankBasedMatrixSegmentation)
export(rankIntensity)
export(rapidlyInspectImageData)
export(readAntsrTransform)
export(readNormalizedPopulationData)
export(reflectImage)
export(reflectionMatrix)
export(regressProjections)
export(regularizeSimlr)
export(reho)
export(renormalizeProbabilityImages)
export(reorientImage)
export(resampleImage)
export(resampleImageToTarget)
export(resels)
export(rfSegmentation)
export(rfSegmentationPredict)
export(rftPval)
export(rftResults)
export(ri)
export(robustMatrixTransform)
export(rsfDenoise)
export(save.ANTsR)
export(sd)
export(segmentShapeFromImage)
export(segmentationRefinement.predict)
export(segmentationRefinement.train)
export(setAntsrTransformFixedParameters)
export(setAntsrTransformParameters)
export(simlr)
export(simlrU)
export(simulateDisplacementField)
export(skeletonize)
export(smoothAppGradCCA)
export(smoothImage)
export(smoothMatrixPrediction)
export(smoothMultiRegression)
export(smoothRegression)
export(spacing)
export(sparseDecom)
export(sparseDecom2)
export(sparseDecom2boot)
export(sparseDecomboot)
export(sparseDistanceMatrix)
export(sparseDistanceMatrixXY)
export(sparseRegression)
export(spatialbayesianlm)
export(splitChannels)
export(splitData)
export(splitMask)
export(splitNDImageToList)
export(statFieldThresh)
export(subgradientL1Regression)
export(subjectDataToGroupDataFrame)
export(sum)
export(taskFMRI)
export(temporalwhiten)
export(testEanat)
export(thresholdImage)
export(timeseries2matrix)
export(timeseriesN3)
export(timeserieswindow2matrix)
export(trapz)
export(usePkg)
export(var)
export(vectorToMultichannel)
export(vwnrfs)
export(vwnrfs.predict)
export(weingartenImageCurvature)
export(whiten)
export(writeAntsrTransform)
export(writeNormalizedPopulationData)
exportMethods("components<-")
exportMethods("direction<-")
exportMethods("origin<-")
exportMethods("pixeltype<-")
exportMethods("spacing<-")
exportMethods(Arith)
exportMethods(Math)
exportMethods(Summary)
exportMethods(abs)
exportMethods(acos)
exportMethods(acosh)
exportMethods(anyNA)
exportMethods(as.matrix)
exportMethods(as.numeric)
exportMethods(asin)
exportMethods(asinh)
exportMethods(atan)
exportMethods(atanh)
exportMethods(ceiling)
exportMethods(check_ants)
exportMethods(components)
exportMethods(cos)
exportMethods(cosh)
exportMethods(cospi)
exportMethods(dim)
exportMethods(direction)
exportMethods(exp)
exportMethods(floor)
exportMethods(gamma)
exportMethods(is.finite)
exportMethods(is.infinite)
exportMethods(is.na)
exportMethods(is.nan)
exportMethods(lgamma)
exportMethods(log)
exportMethods(log10)
exportMethods(log2)
exportMethods(max)
exportMethods(min)
exportMethods(origin)
exportMethods(pixeltype)
exportMethods(round)
exportMethods(sign)
exportMethods(sin)
exportMethods(sinh)
exportMethods(sinpi)
exportMethods(spacing)
exportMethods(sqrt)
exportMethods(tan)
exportMethods(tanh)
exportMethods(tanpi)
exportMethods(trunc)
import(ANTsRCore)
import(grDevices)
import(methods)
import(stats)
import(tools)
import(utils)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,heat.colors)
importFrom(grDevices,hsv)
importFrom(grDevices,jpeg)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,lcm)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,title)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,AIC)